Gene detail

Detailed information of XP_001628163.2 in Nematostella vectensis

Genomic Location: NC_064037.1:3718263...3729697
NR annotation: XP_001628163.2, amyloid protein-binding protein 2 [Nematostella vectensis]
Species abbreviation NVECT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001628113.3

AATCGTGGGACAGACTCGCACGTCAGGGAGAGAGAACTGGATGTAAACATGGCGGAGAAAGAAGTTGGATCCCTGTATAATCTCGCTATCAGCCAAGCAGTCCGGCTTCACAGATTATTCACGAGGGAATACAGACATCTACCAGATACCGTACAATGCGACGTTTATTACGAGCTGTATAAATCGGGGAATTTTGTTACATTGGCCGAAGAAGTTAGGAATATTGATGTATTTGCTAAAGCACTTCGAGCTGGAACTAGAAGGATCAAACTTTACAGACCCTTCCAGGAGCTTGTAGATGAAGGGTACAACTTGCCCCAAGAGCTGGCTATAGAGTTTAGGTGCAGATGTAAAGCTTCTCAGAGACAGGGTTCCCATTCAAAGGACTATGAGGCACTTCTCAGTATCGGATGGCTTGTTGggGGCTTCCTGTCGGAGACGGGCTGGGACCTTGCTGCAGAGCAGATCTCTGAGGACTGTCTATCATTGTGCGATGTGAGAAAGATTGGTGACTGTAAAAAAGCTCTTAAGTGTGTTACAAGGCTTCTCCATGTCCGGACGGGCTATTGCAAGTTTGCTGAGGCGCGGCATACGTTTGACTTTGCAATGGAGCTGGTTCAGAAACTAAGAAACAAGGGTGAGAAGGTCAATACTGCAATGCTGTACGGTGAGAGATGTGGGCTGCTGTTTGCACTGAGTGAATATGAACAGGCCTTCAAGAACAGTATCAAAGCACTCCAAGATGTTACTTCTTATCTACACGACAAGGTTATTATTGATATACTGAGGCATGCAGCAAAGGCATGTGTTGTCAAGAGAAAATTCAGGAAGGCAGAGGCGCTAATAAAGCAAGCAATGATATTAGCAAGACACACTTTTGGTGATCAGCACCCCAAATTTGCAGATGTCTTGGTGGATTATGGGTTCTATTTACTAAATGTGGACTCTATTCATCTTTCTGTTCAGGTTTACAAGACAGCATTTCGGATCAGAAGTGAGGTGTTTGGTGTGAATAATCTCCATGTGGCTACCGCACACGAAGATCTCGCCTACGCCATGTACGTCCATGAGTATAGCACCGGAAACTTCGCAGAGGCAAAGGCAAATGCAGAGCGATCCATAGACATCGTCACTAAACTTTTTCCTGACGATCATTTACTACTCGCCTCTTCCAAAAGAGTCAAAGCTCTTATCTTGGAGGAGATCGCCATCGACTGTCACAACAGGAAGTTGGAAGACGATATTTTACGAGAAGCCCAGCAACTGCACCTCGCATCACTCGACCTGGCGAGgaAAGCATTCGGGGAAAATAATGTACAGACTGCAAAGCATTATGGGAACCTCGGAAGGCTGTACCAATCAATGAGACGATATGAAGAAGCCGAGGAGATGCATAAAAAGGCCATTGAAATCAAGGAGAGAATTCTTGGAAGTGAGGATTATGAAGTAGCTCTGTCGCTTGGCCACCTCGCTTCGCTGTATAATTACGATATGGAGCGGTACGACAAGGCGGAACAGCTTTATGTCCGGTCGATAGAAATAGGTCGTAAACTATTTGGAGAGGGATACAGCGGACTGGAGTACGACTACAGAGGACTTATCAATTTATACGACTGTGTTGGTGATTTTGACGACATGGAAAAGTACCACAGCATCCTGATCGAGTGGCGGGAGATCCGTGAGAACGTCGACAACAAGAGTGCGATGGAAGAAGAGCCGGGAGAGCCCGACCCCACTCACCAATTCATTGCGAACTTCCTCAGCGATATAGACCATCACTAACCCTTATTAGATATCACAAATTATTTATTCTTTAAAGCTTGGTAAGCGACTGCGCCCATAGATTAATCTTGATATCTTACACATTTGGtaactcgaaaaaaaaatcttgataACACATTCAATGTGGCATCAACAATCCATCCCTTCAAAGCGACCTCCTATTCTGCCCGTAAAAGGTTGGGAACTCATTCAGTTGATAGGGATTTGATCTTTCTAAGGTAGAATGTTTTAATATTTCCTAGGATTTCTTATCACCAGGTTTTATACTATGCAGATTTCAGGTGTATTATGAAAACGCTTAAAAGCGCATGATAGGATTCAGCTATAATACAAAGGCAGTGCGATAGAATTTGTAAATATGTTAATTGTATATAAAATTGATATCTgaaataaatcatttttatttgcaAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DAX9	Amyloid protein-binding protein 2 OS=Mus musculus OX=10090 GN=Appbp2 PE=2 SV=1
Q92624	Amyloid protein-binding protein 2 OS=Homo sapiens OX=9606 GN=APPBP2 PE=1 SV=2
A5HK05	Amyloid protein-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Appbp2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005518 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR042476 all species →	Family	Amyloid protein-binding protein 2	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46575 all species →	AMYLOID PROTEIN-BINDING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031462 all species →	Cellular Component	Cul2-RING ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:1990756 all species →	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25806	APPBP2; amyloid protein-binding protein 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.