Gene detail

Detailed information of XP_001628780.2 in Nematostella vectensis

Genomic Location: NC_064046.1:2043497...2052964
NR annotation: XP_001628780.2, diphosphomevalonate decarboxylase [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001628730.3

ATCACAAAGGAAATGCTTTGTAAATTGCAGTTTTATATAGTAGCCTAGGAGTATATATACACTTTTGACACTTGCAATAATACATCTTCTGGCCTCCTGTGGAATAGCTTTCCGCTGATCAATTGCAGGCTTAGTTTTCATGcatttcaagatggcggacgattTGGAAACATCTGCAAAACGCCAAAAAACTGAGCAAATATTTCGCGTAACAGTGAAGGCGCCCATCAATATCGCAGTTATTAAATATTGGGGAAAGAGAGACGAGGAGCTTATTTTACCTTTAAATTCTTCCCTCAGTGCAACGATCAACTTAGATGAGCTTTGCACTACTACTACTGTTGTAGCGAGGAGAGACAACCCACAAGACTCTTTATGGATTAATAAAAGGGAACAACCTATTGCAGAATCTCCAAGGATTCAGAAATGCATCTCAAAAgTAAGGCAGTTGGCTAAAGAGAACTCCCCAGAGAGATGGCAAGAGCTTAGAAATTATGGTCTGTGTATCTATTCCAAGAACAACTTCCCTACAGCTGCAGGACTGGCATCATCTGCGTCAGGCTACGCATGTCTTGTGCTTGCATTGTCAAAATTATATCATCTTGATATGGAGCTGTCAAGCATAGCAAGGCAGGGATCAGGAAGTGCCTGTCGTAGCATGTACGGCGGATTTGTGAAGTGGGAGGCAGGGTGTCGACCTGACGGCACTGACAGCATTGCTAGCCAGATTGTGGATGAAAAACACTGGTCAACACTCCGCATCCTTATACTTGTGATTAATGATGAAAGAAAAGCTAACCCCAGTACATCTGGCATGAGACGAAGCACAGAAACAAGTGAGCTTTTGCAGTTTAGAGCTCAGAAGTGTGTTCCTAAGAGAATGGAAAATATCACAAAAGCTATCAAGGAGAGAGATTTCCACACATTTGCAGAGATTACAATGAAGGACAGCAACCAGCTGCATGCAGTGTGTCAAGATACTTACCCACCCATCACGCCACCCTACATGAACTCCACCTCACATCTCGTGGTACAGCTAGTGACGGCCTACAACAATAACCATGGCAACAACAAGGTTGCATACACATTTGATGCAGGACCTAATTCTGTTTTGTTTACGCAAGAGGGTGACCTTCCTGAGTTGGTAGCTTTGATAAAGCACTTCTTCCCTCCTGCTTCTGGAAAAAGTTTTGTCCAAGGTATACCAATACCAGACAGCGGCATTGAGAAGGGCCTGCTGAATGCAATTGGTATGGATCCCAATCCTTCCAGCATAAAATATGTCATCAGTACAAAGGTTGGTAGAGGACCTATCTTAATCAATGACAACAAAGACCATTTATTGGATGCGACTGGAAACCCCTTTGAATAACAAAGTTTCTGAAGGGCAAGACAAGACTAAATTATTCTTTAATAGATAGTATAGTGTATTGTATTATGATTGGAAAATGTGATGAAATATGTAATAAATCAAATAGTTTCAAAGTCAAATGAAAAAACAtaacacaatttttttttcctcttacAACCTACACTTTCTTACTAGAATGGTTATACTTCTAAATCCATGAAAGGTTtactgcctttttttttcttttgtaacaTTCCCAGTTACCAACACTCCCAGTAACCAACAAAACCATCAAATTTCTGGCATTGTTAAGCGCAAGATAAACAGAATTTGTTAGGCTGACTtctgcctttttttatttgtcagGCTTGTTTCAGCTAGCAGGCCCCCAATGCATGATGGGGGGCCGCTCAGGTTATGCTATTTATCTTGACCAGGTTTTGATTTTATCATCAGAATTTAGCCTAATAAATCTGTTCTTCCTGCCCTTGCTAAATCTTCTGTACAGTATTTGCACAATGATGAAGACACATTTCTGAAATAATTATTAAGGTATACATGCCCTAAAGGCTATCCACTGAGAATCCCGAAATTGAGAAAATCAAGATTGTCCTCTCAACAGCAACAGCTATGTTGTTGTGTTTTAGAATACAGACCTTGATGTTAAAGAGCATTATTGTTTTGAGAAAAAGTCAACAAATAGGGGCCCTAATTAAACTGCAGGGGCAGTTCCTGTCTACTGCTATTCCAATACATTCCCAGGTGcagttgggatttttttttactgtccATAGATACAGAATGGCTATAGAGAAGGGAATGTCTTGAACAAAGGCTTTAGAACATCAACTGACTGCTTTATACTGAGCGAGCCTTAGAGTATGCTAATAAACCTAGCTTCAGAGTATAGACCAGGCCTTGGATTATAGACTGGCCCTCAAAGTATTGACCAGAATATAAACCAGACTTCAGAGTATAGACCGCCTATATGGACTACCCTCTTCATGAGATAGCCAAAGATGCCGCTTCAACTGGATTGCTGTGATGAATTTCTTGTCACACTGCTCACAGACAAACTTCTCATCGCCAACATGCTGTTTGATGTGTCGTCGTAGGCCCTCCAGGTTCTCGTAGGTCTTAGGGCACCACTGACATCTGATTTTGAAAGTTGAAGTGGTCAATAAACAAGTGAACCTGG

Protein

Uniprot

Uniprot term	Description
Q0P570	Diphosphomevalonate decarboxylase OS=Bos taurus OX=9913 GN=MVD PE=2 SV=1
Q99JF5	Diphosphomevalonate decarboxylase OS=Mus musculus OX=10090 GN=Mvd PE=1 SV=2
Q5U403	Diphosphomevalonate decarboxylase OS=Danio rerio OX=7955 GN=mvd PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18376	MDD_C	Mevalonate 5-diphosphate decarboxylase C-terminal domain	Domain	Interproscan
PF00288	GHMP_kinases_N	GHMP kinases N terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005935	Family	Diphosphomevalonate/phosphomevalonate decarboxylase	Interproscan
IPR036554	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR041431	Domain	Mvd1, C-terminal	Interproscan
IPR006204	Domain	GHMP kinase N-terminal domain	Interproscan
IPR029765	Family	Diphosphomevalonate decarboxylase	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10977	DIPHOSPHOMEVALONATE DECARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008299	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0016831	Molecular Function	carboxy-lyase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0004163	Molecular Function	diphosphomevalonate decarboxylase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0019287	Biological Process	isopentenyl diphosphate biosynthetic process, mevalonate pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01597	MVD, mvaD; diphosphomevalonate decarboxylase	EC:4.1.1.33	Terpenoid backbone biosynthesis	ko00900	deepkoala