Gene detail

Detailed information of XP_001628971.3 in Nematostella vectensis

Genomic Location: NC_064039.1:8633450...8652216
NR annotation: XP_001628971.3, pentatricopeptide repeat domain-containing protein 3, mitochondrial [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5508367

ATGGCGGCCACGAGTGCCATTTGTGCACTTCGAGGATCCGCGAAAACCTACCCTCTCTGCCGGGCTGCAGTATTGTCGAGACTCCTCTCAGGGTCTACTAAAAATGCAAACAAGACACTGGTAAAAGAAAGCACAACAGAAGATGAGCACTCACCAAGGGACCCACTGGCAGTACTCAAGGCACTGGCGTCGACTGTCGAACCAACTGCGCTGGCCCCACCCAAAGAGTTATATGAAGACGTCTTACTCCTACCAAGGACCCCAAGAAAGAGGGAAGAATGCAAGGCAGCTATGATGTCTGGTAGAAAGGCAGCTGAGTTTGTCATCAGTAGATACCCTCAGCTTTTCCCTATGCGAAAACCAGAGCCAGCATGGCCAAGACCAGATCCACAAGTCCTGGATATTCAGGAGGAAGATGATTTAAAGTCACTAATAACTCAAATGAAACCTCAAGAAGCAATTGAAGCATATGAGAAACTCCTGGAGTTAGGAGTAGCAATATCTTTAGAGACACAAAATGATTTGCTGGACCTGGTAGCTTTCTTTGGGGTGTCAAACATCACTACTGAGGAGGTTGAGAAAGCAAGTGAGGAATCCTCATCATCATCAAGTTCTGAATCCTCTGATGAAATGGAATCATCAGACGATGAACCTGAGGTTATCCTTAAAGATCGGTATGAGAACACATGGAGCATGGACAACTATGCAGAGCAACTTTTTAGCAAAATGGAAACAAAAAATGGACGCACATACGAGGCGATGATTCTAGCATTGTTCAAGCACAATAATTACAAAAGAGCGTTTGAATTGTATGAAGAGATGAGACAGCAAGGGTTTCAAGCTAATGTCAACACTTATGCTGTGCTATTTACTAAATCCATGGACCAGTATGGACGAGGACAGAAGCTGTGGGAAGGCATAGAGAGACTTATTGGTGAGATGAAAAAGGCACCTGCTGTCAAGCCAAATCTCGTTGTCTATAATGAGATCCTTAAGATGTGCGGGTTTGTGCCAGACGGAACAGGCAAGGCCATGATGGTTTTCAGAGACCTCTATGATAAAGGAATCGAGCCATCGCTTGGGAGTTACAGTTTGTTGATACGTGCAGAGTACTATCTCAAACGGACCAGGGCTGTAGACGAAGGAATTGATCCATCTACCATCGACCTCCCCAACAATACATTACTACAGAACATTATCACCCACCTGGAGAGTCTTCCAGCTTTCCCAGAGATGCAAAGCTACTCAGACGTGAAATTCTTCAACACAGCTATTGGAGCTGCGCTTTACTGCCGGGATGCGAATGCTGCACACAGACTTCTAGCACTTGCACACACAAACCCAACCAAGTACCTTGGGCCCAAACGAGGGCAGTTCTACGCCACATTCCTAGCAACACTGGCACGATCAGAAGAAAATCCCGAATTGACATATAGAATGTACAAGGAACTAGTCCCCTCCAAACTCTTGCCTCAGCCGTGGGTGTATGCAGAGCTACTGCGCATGGCAGAGAAGGCCAGGCTGCCAAGGCTCGTCCCGCGTTTCTATGACGATATGAAGCGCTACCGTACCCCTCTGGAGCAAAGTGTGTGCAGAGGAATATTTTCAGCGCTGAGCAGAAAAACTGAAGTCAAGCATTACAAGGAATATGTTGATATTATGACAGATGTGTTCTTCTGGATGAAGAAATTCAACATCCCGGTTGATGGCTTCATGATCTCCCAACTTGTTCGCCAACACTCAACTGTTGGACAAATTGAGCAGGCCTGGAAAGCCTTTGAAATGTTCGACGAGCTCAAGCTTGTACCAACGTATACCGCGTTAACAGGTCTCTTGCAGTGCTGCAAACTGCGTAAAGACGCCCGTCAGGCGGTGAGAGTTTTTGAAATGATGGCAGAGAATGGCTATGGCATCCATATGCGCAAGCGCAGTGACGTGTTTGAAGCCACGCAAATGCAATTAGCAGAAAGAGTACGTATAAACAAGCTTTTTGAGGACTTTTCCAAACTCGATGATCAACGAACGGCCATCAGAAACCAACACATGCTTAAGAAATCCCGCGAGGAGGAGCCAATCGATGGAAGCTCTGTCTAG

Transcript

rna-XM_001628921.3

CTATCGTGAACGCGTAAGCCTAGGCTAGCGCCAGTCTTCTTCTGCCGGGcaatccaacatggcggccacGAGTGCCATTTGTGCACTTCGAGGATCCGCGAAAACCTACCCTCTCTGCCGGGCTGCAGTATTGTCGAGACTCCTCTCAGGGTCTACTAAAAATGCAAACAAGACACTGGTAAAAGAAAGCACAACAGAAGATGAGCACTCACCAAGGGACCCACTGGCAGTACTCAAGGCACTGGCGTCGACTGTCGAACCAACTGCGCTGGCCCCACCCAAAGAGTTATATGAAGACGTCTTACTCCTACCAAGGACCCCAAGAAAGAGGGAAGAATGCAAGGCAGCTATGATGTCTGGTAGAAAGGCAGCTGAGTTTGTCATCAGTAGATACCCTCAGCTTTTCCCTATGCGAAAACCAGAGCCAGCATGGCCAAGACCAGATCCACAAGTCCTGGATATTCAGGAGGAAGATGATTTAAAGTCACTAATAACTCAAATGAAACCTCAAGAAGCAATTGAAGCATATGAGAAACTCCTGGAGTTAGGAGTAGCAATATCTTTAGAGACACAAAATgatttgctggacctggtAGCTTTCTTTGGGGTGTCAAACATCACTACTGAGGAGGTTGAGAAAGCAAGTGAGgaatcctcatcatcatcaagtTCTGAATCCTCTGATGAAATGGAATCATCAGACGATGAACCTGAGGTTATCCTTAAAGATCGGTATGAGAACACATGGAGCATGGACAACTATGCAGAGCAACTTTTTAGCAAAATGGAAACAAAAAATGGACGCACATACGAGGCGATGATTCTAGCATTGTTCAAGCACAATAATTACAAAAGAGCGTTTGAATTGTATGAAGAGATGAGacagcaagggtttcaagctaaTGTCAACACTTATGCTGTGCTATTTACTAAATCCATGGACCAGTATGGACGAGGACAGAAGCTGTGGGAAGGCATAGAGAGACTTATTGGTGAGATGAAAAAGGCACCTGCTGTCAAGCCAAATCTCGTTGTCTATAATGAGATCCTTAAGATGTGCGGGTTTGTGCCAGACGGAACAGGCAAGGCCATGATGGTTTTCAGAGACCTCTATGATAAAGGAATCGAGCCATCGCTTGGGAGTTACAGTTTGTTGATACGTGCAGAGTACTATCTCAAACGGACCAGGGCTGTAGACGAAGGAATTGATCCATCTACCATCGACCTCCCCAACAATACATTACTACAGAACATTATCACCCACCTGGAGAGTCTTCCAGCTTTCCCAGAGATGCAAAGCTACTCAGACGTGAAATTCTTCAACACAGCTATTGGAGCTGCGCTTTACTGCCGGGATGCGAATGCTGCACACAGACTTCTAGCACTTGCACACACAAACCCAACCAAGTACCTTGGGCCCAAACGAGGGCAGTTCTACGCCACATTCCTAGCAACACTGGCACGATCAGAAGAAAATCCCGAATTGACATATAGAATGTACAAGGAACTAGTCCCCTCCAAACTCTTGCCTCAGCCGTGGGTGTATGCAGAGCTACTGCGCATGGCAGAGAAGGCCAGGCTGCCAAGGCTCGTCCCGCGTTTCTATGACGATATGAAGCGCTACCGTACCCCTCTGGAGCAAAGTGTGTGCAGAGGAATATTTTCAGCGCTGAGCAGAAAAACTGAAGTCAAGCATTACAAGGAATATGTTGATATTATGACAGATGTGTTCTTCTGGATGAAGAAATTCAACATCCCGGTTGATGGCTTCATGATCTCCCAACTTGTTCGCCAACACTCAACTGTTGGACAAATTGAGCAGGCCTGGAAAGCCTTTGAAATGTTCGACGAGCTCAAGCTTGTACCAACGTATACCGCGTTAACAGGTCTCTTGCAGTGCTGCAAACTGCGTAAAGACGCCCGTCAGGCGGTGaGAGTTTTTGAAATGATGGCAGAGAATGGCTATGGCATCCATATGCGCAAGCGCAGTGACGTGTTTGAAGCCACGCAAATGCAATTAGCAGAAAGAGTACGTATAAACAAGCTTTTTGAGGACTTTTCCAAACTCGATGATCAACGAACGGCCATCAGAAACCAACACATGCTTAAGAAATCCCGCGAGGAGGAGCCAATCGATGGAAGCTCTGTCTAGAGGAACAGACACGTGCCTTTACGTCCTTTTACGAAATGTACACGTTGTCGCGTGCTAATGTAAAAATACTGTTAATAAACATTAATTAGAAAATA

Protein

Uniprot

Uniprot term	Description
Q14C51	Small ribosomal subunit protein mS39 OS=Mus musculus OX=10090 GN=Ptcd3 PE=1 SV=2
Q5R8W8	Small ribosomal subunit protein mS39 OS=Pongo abelii OX=9601 GN=PTCD3 PE=2 SV=1
Q96EY7	Small ribosomal subunit protein mS39 OS=Homo sapiens OX=9606 GN=PTCD3 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13041	PPR_2	PPR repeat family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR037387	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17659	PTCD3; pentatricopeptide repeat domain-containing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala