Gene detail

Detailed information of XP_001629017.2 in Nematostella vectensis

Genomic Location: NC_064045.1:9802596...9828917
NR annotation: XP_001629017.2, uncharacterized protein LOC5508434 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5508434

ATGGCGAAGTCGAGCTCGTCAAAAAGTTCCATTTCTACCAAGGAACTCGCAAAGACACTAGGGTTAGTCAGCAAATGGTCTTCAGGCAAGAAATCAAGGTCTTCTAAGAAACAGCCTTTCGACTATTTGGTAGTGATAGACTTTGAATCAACATGTTGGAAAGAGAAGAGAAGGAATAGTGCACCAGAAATAATTGAGTTTCCTGCAGTAGTGGTCAGTACCTCTACTGGTGAAATAGTCTCAGAGTTTCGACAGTTTGTGTCCCCAACTGAGCACTCACGTCTGAGTGAATTCTGCACCAAACTCACAGGAATCACACAGGACCAAGTAGATGCAGGGATTCCTATTGGGGCGTGTCTTGTGCTTTTTTCTCGCTGGTTAAAGGAGCTGCAACAGCTGAAAGGCATCAGATTCATGTCTGACATCACGAGACCCAACGGCAGGCCAATAGACCAGGCGAAATGGGCAATGTCTGTCACATGGTCCGACTGGGATATCGGGATCTGTCTGAAGAACGAGTGTCTAAGAAAGAGACATCTAGTGCCGCCTGAACTTCGGAGTTGGATAGATCTCAAGGCGACTTATAAGAAGTTCTATAGTCGTAAGCCTGACGGGCTGGCCGGTGCACTCAAGGATTTGGGGATACGGTTTGATGGTAGAGAACACTCAGGCCTAGATGACGCGCGGAATACCGCTGCTCTGGCGTGGAGGATGGTGCGTGACGGATGCGTTATTAGCGTGACCAGCTCTTTAGACGCGAGTGTGAGCACCCTTCAAGGGATCATCCTTAACAATTTCCAAAACACTCCTGCGATTGGCTCGAATCTGTCAGCGCAACAAAATCAAGGACAAGGCATTGTCAATGTCAGCAATACTACAAGTCCTGCTTGCAGCCGCTGCTCAGAGAATCTCGGACGTAATATACCCCTTGCTATACTTGACCACTGGGAGAGCACTTCTTTTACCAACGCTAATCGTACGATAAAACAAGTTAACTACGTTAAGAACCGTGGGTCCCAAGGCCCACCGGGAAAACTTGACCACGGGAACAGCACGTGTATCCCAGACGCCAACCTCGTGCTCAGGCACAGTATCAGATCTTGCCATTCAAGCAATCATAGCGTGCATAACAACTACAACTCGCCTATATCCCCTGCAGTAGTTTTTGAACCACTCGCTGAAAATCCACATGATTTGTGCGAGCAAGAAAGGGATTTCTTGACGACGAAAGTTCAAAGTTTGATTACCCCTCGCGTTTCACTATTGAGTGTACCGGACACTGATGTTAAAGAAAACAAGTCTACTTGCCTGGTTCCCACCGCCACCTCCCTTAGTTCTCTAAGAACGTCGAGGATGCCTTCTGTTCTAAAGGGAGAGCTATTTTCTCTCGAGTCACGGAAGGTAAATGCACGAGACAAGACAGACGTCGTGCAGAGAGGATTGGTGAAACAGAGTGTGGTGGTGAACAAGACCCTTAGTCAGGGCAGTACAGAGAGACGGGCACTAGGAATCAAGCGACGACGATATCACGGCACGGGTGATCCCCATGGCACCGCCACAAACCGCCTAGTGACGTCAAATGAAACCGCTGACTGTAAACATGCTCACACAACAGGTCCAGGTTCCTCGACGCGCGTGACTAGTGTACCACCATGCAACGCGACAGCGAAATACGTCAATGCTACCATTTCCTGCTCCAAAAGCGTGACGCCCCCTGTCACGCCAACCACTGGCAATGTTACGACATCTACAGGCACCGCTGTGCAATCAACGCTTGTCACGAAAGTACCGCACTCTCGAACTGTCACGCCGTATTCTACTAATTTTACAAACTCTTCGGATAGTCCGATGAAAAGGCACCTCACAAATGTCAAAGCCACAGGACTTGTCGCGCCAATTACCAAGTATTTCATTTACGGTTGCGTTACTCCTGGCGCATCACGCACACCGACCCTTGTGCCTAGCATTAATGGCGGGAATACAACTCCGCCGCTATGTGATTGCGGGCGACGGGCTAAACGACTGACCGTAATGAAGCCCGGACCCAATCAGGGAAGAGTATTCTACGCTTGCTCAGTAGGCAAATCTAGAGCCAGTTTTGGGCGAACGCCAATGAAGAAAAAGTCCGGGTGTAACTTTTTTCACTGGGAACCGCGTGTCTCTCGGGAGGTGTCGCGGGCTCAAAGTGCGCCTGGTGTTTTTACACGAACTAAACGCGTAACTGGTCAGCAGTATTTTATTAAGCCACAAAGATTCAGTGTTGGATGA

Transcript

rna-XM_001628967.3

ctgaaatttgaaaaaaaatgttggctCGTTCGTCGCTTGCTTGGTTGCTTTTCGTTGGAGCtggtttgttgttttgtttaaattctTAAGCATCTCCTGTTTATCCATATCTTTAGTTCTGAGAATGAGTGATAACATCCACTATCGATGAGTGAAGAAAAGTGGAGCAAGTAGAAGCGAATATGGCGAAGTCGAGCTCGTCAAAAAGTTCCATTTCTACCAAGGAACTCGCAAAGACACTAGGGTTAGTCAGCAAATGGTCTTCAGGCAAGAAATCAAGGTCTTCTAAGAaacAGCCTTTCGACTATTTGGTAGTGATAGACTTTGAATCAACATGTTGGAAAGAGAAGAGAAGGAATAGTGCACCAGAAATAATTGAGTTTCCTGCAGTAGTGGTCAGTACCTCTACTGGTGAAATAGTCTCAGAGTTTCGACAGTTTGTGTCCCCAACTGAGCACTCACGTCTGAGTGAATTCTGCACCAAACTCACAGGAATCACACAGGACCAAGTAGATGCAGGGATTCCTATTGGGGCGTGTCTTGTGCTTTTTTCTCGCTGGTTAAAGGAGCTGCAACAGCTGAAAGGCATCAGATTCATGTCTGACATCACGAGACCCAACGGCAGGCCAATAGACCAGGCGAAATGGGCAATGTCTGTCACATGGTCCGACTGGGATATCGGGATCTGTCTGAAGAACGAGTGTCTAAGAAAGAGACATCTAGTGCCGCCTGAACTTCGGAGTTGGATAGATCTCAAGGCGACTTATAAGAAGTTCTATAGTCGTAAGCCTGACGGGCTGGCCGGTGCACTCAAGGATTTGGGGATACGGTTTGATGGTAGAGAACACTCAGGCCTAGATGACGCGCGGAATACCGCTGCTCTGGCGTGGAGGATGGTGCGTGACGGATGCGTTATTAGCGTGACCAGCTCTTTAGACGCGaGTGTGAGCACCCTTCAAGGGATCATCCTTAACAATTTCCAAAACACTCCTGCGATTGGCTCGAATCTGTCAGCGCAACAAAATCAAGGACAAGGCATTGTCAATGTCAGCAATACTACAAGTCCTGCTTGCAGCCGCTGCTCAGAGAATCTCGGACGTAATATACCCCTTGCTATACTTGACCACTGGGAGAGCACTTCTTTTACCAACGCTAATCGTACGATAAAACAAGTTAACTACGTTAAGAACCGTGGGTCCCAAGGCCCACCGGGAAAACTTGACCACGGGAACAGCACGTGTATCCCAGACGCCAACCTCGTGCTCAGGCACAGTATCAGATCTTGCCATTCAAGCAATCATAGCGTGCATAACAACTACAACTCGCCTATATCCCCTGCAGTAGTTTTTGAACCACTCGCTGAAAATCCACATGATTTGTGCGAGCAAGAAAGGGATTTCTTGACGACGAAAGTTCAAAGTTTGATTACCCCTCGCGTTTCACTATTGAGTGTACCGGACACTGATgttaaagaaaacaagtctactTGCCTGGTTCCCACCGCCACCTCCCTTAGTTCTCTAAGAACGTCGAGGATGCCTTCTGTTCTAAAGGGAGAGCTATTTTCTCTCGAGTCACGGAAGGTAAATGCACGAGACAAGACAGACGTCGTGCAGAGAGGATTGGTGAAACAGAGTGTGGTGGTGAACAAGACCCTTAGTCAGGGCAGTACAGAGAGACGGGCACTAGGAATCAAGCGACGACGATATCACGGCACGGGTGATCCCCATGGCACCGCCACAAACCGCCTAGTGACGTCAAATGAAACCGCTGACTGTAAACATGCTCACACAACAGGTCCAGGTTCCTCGACGCGCGTGACTAGTGTACCACCATGCAACGCGACAGCGAAATACGTCAATGCTACCATTTCCTGCTCCAAAAGCGTGACGCCCCCTGTCACGCCAACCACTGGCAATGTTACGACATCTACAGGCACCGCTGTGCAATCAACGCTTGTCACGAAAGTACCGCACTCTCGAACTGTCACGCCGTATTCTACTAATTTTACAAACTCTTCGGATAGTCCGATGAAAAGGCACCTCACAAATGTCAAAGCCACAGGACTTGTCGCGCCAATTACCAAGTATTTCATTTACGGTTGCGTTACTCCTGGCGCATCACGCACACCGACCCTTGTGCCTAGCATTAATGGCGGGAATACAACTCCGCCGCTATGTGATTGCGGGCGACGGGCTAAACGACTGACCGTAATGAAGCCCGGACCCAATCAGGGAAGAGTATTCTACGCTTGCTCAGTAGGCAAATCTAGAGCCAGTTTTGGGCGAACGCCAATGAAGAAAAAGTCCGGGTGTAACTTTTTTCACTGGGAACCGCGTGTCTCTCGGGAGGTGTCGCGGGCTCAAAGTGCGCCTGGTGTTTTTACACGAACTAAACGCGTAACTGGTCAGCAGTATTTTATTAAGCCACAAAGATTCAGTGTTGGATGACCACGGTCTTCAAAATAATGTGTGAAtttattataatatataataatacaaTATTCATGTTATCCCGTGTAAAACCACCTTCAGATTATGAATTGCAATTaaatataaatacaata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5BKS4	ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1
A8K979	ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=1 SV=2
Q5HZL1	ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001739 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06839 all species →	zf-GRF	GRF zinc finger	Domain	Interproscan
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR010666 all species →	Domain	Zinc finger, GRF-type	Interproscan
IPR051274 all species →	Family	3'-5' Exoribonuclease	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR047201 all species →	Domain	ERI-1-like, DEDDh 3'-5' exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23044 all species →	3'-5' EXONUCLEASE ERI1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18417	ERI2; ERI1 exoribonuclease 2	EC:3.1.-.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001629017.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

8.4Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	6.56	8.35
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.23	5.34
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.99	3.29
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.85	3.10
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.39	3.93
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.05	3.15
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.25	5.15
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.59	5.06
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.17	3.46
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.99	3.15
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.15	4.17
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.46	5.48
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	3.69	6.64
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	3.39	6.07
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.12	3.31
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.04	3.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.35
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.32
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.02
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.34
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.85
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.51
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.29
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.97
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.71
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.10
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.85
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.61
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.93
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.74
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.51
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.15
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.15
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.61
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.06
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.95
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.77
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.46
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.04
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.15
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.83
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.17
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.92
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.38
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.48
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.91
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.64
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.43
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.07
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.11
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.31
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.06
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.11
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.