Gene detail

Detailed information of XP_001629191.2 in Nematostella vectensis

Genomic Location: NC_064039.1:8970152...8972421
NR annotation: XP_001629191.2, beta-1,4-galactosyltransferase galt-1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001629141.3

ATGTGGACAAGTAAGATTTCTTAAATAATAGTTGTGATTGCTGGTGCACATGATTATGCGAATTATGCGAAAACATGATTATTTTCGATATTTGCATGCAGTAATTCAACCTGAACAGACGAATAACTTGCAACAGGGCGACTGACgtgttgtttgttatttaattCGACAAAGTTTACCCCAAAAAGGTATCAATCGTTTGACTGAAGTAGAAAGTGGAGGCATGGGAGTCTAGTCACACGTTGTCAATCATCAGTGAGACTTAAAAGATGCGATGCTATATTTACAAATGGAGGTTGTCCGTTTGTCTGTTTGTAGTGCTCTTCACAGCACTGCTTTTCATCACCTATTTAAACCACTCAGAGCTTGAATCAGCAGAGAAAAGTAGCGGAAAAAGGAAGACGCGACATCGTAAACGAACACGTTCACGCAAACAACACGAGAGCCATTTTCAGAAAGCTCGACTACAAGAAAGAGAACTAGTATTAAGATCTACAGCGCCACCAACATTACGAAGAGAAGTACAAGCGCATCGATTAGGGCAGATCCGTGGCAAGAACACGGACCAGGGGATAACTGGAAAGTTCACAGAGATCGCTAAAGACACGCATATTTATTCAGCGTTTTACGACGATGCCAAGTCAAATCCATTTATTCGTCTTATCATCCTCTCGGGAAAACACTACCAGCCTGGATTATCTTGCCAATTTTGCGAACCTTTGTCCGCCAGTTGTAGTTTTGCGGACTCTAAAGCTGAATACTACACGACCAACGAGAACCATGGGAGAGTATTTGGCGGGTTCATTGCGAGTTGCCTCGTGCCTGACGGATTCAATGCAGTGCCATTGTTTGTTGACCTAACGGCCGATGTTAAGGGGGAGAAAAGCAAGGCACGGGTACCTGTGGTGTCTAATGCACATCTCTACTACCCTATTAAATACGCAATCTGCGTCCCACCCCTCCGATCAGAGAAACTAACAGCGAAAAGACTCATAGAGTTTGTCGAGCTAACCAAACTTTTAGGCGCTAAccattttactttttatgacTTCAAAACGGACCCGGAAGTCAATAACGTTTTAAGATATTACCAGGAGTCACAAGTAGCAAATGTTCTGCCATGGAATCTACCTTCAAATTTGGTATCCAGGCCGAACGATATTTGGTACTTTGGTCAGGTTTTGGCTATTCTTGATTGCTTGTATCGCTACAAGAACAGGGCAAAATTTGTAGCCTTCAATGACGTAGATGAGTTTATCGTTCCGCTAAGGAACAGCTCGATAGTGGAAATACTAAACGCGTTTCACCGGCCATACCACTGTGGACATTGCTTTCAGAGCGTGGTGTTCAGCTCAAACGCGAGATTTCCCAGGCAAAAAAGCGAGTTAGTTTCTCAGCGGTTCTTCCACAGGACCCAGGAAACCATCCCTCTCCTCTCGAAATGCATTGTGGATCCTTTGAGAGTGTTCGAGATGGGGATTCACCACATAAGCAAGGCTACAGGTCTGCGGTATTCCGTCAACTCAGTACACGAGAGTGACGCGGTTATCTTCCATTACAGGACTTGCACTACGTCATTTGGTATACGTCATCAGTGCATGAACCTAGTGCATGATGGGACCATGGCCAAATATGGAAAACGACTTCAGAAAAGGTTTAGAAAGGTTGTAAATGATTTAAAACTTTTGGCACCAACGTAGCTATTTCGTAACACTTCACACTTTCATTGTTATAACAGAATACAGAATAAATTAATGATTGTTGTGCCAAAATGAAGGACATCTCTTTTAAAGGATCATCAAATACTatactttttcaatttgatACCTATGACAACCTCCCTCAGCAAATCCACGCATGCGTATTATACACTCTTCTTTATAAGAACCcatctcgttcccagagcccacGTACCTTTGTGCCAGCGGCAAGGTGCAAGGCTCTGggataatcaatttttttcaccaaCAGAATCTGTTAGTTCCGGTTTTACAGCGCATGTCCAAACAAAATTGCCACCGGAAGGAACCAGAGTTGATCTCTTTCACTGATCGATCCAATTCGCGCTGGCATAAAGGAACGTcggctctgggaacgagattgtataagaacgtctaatttccAGTTGAGGCTGGCCGTACTAATCTTTagtattttaaggctgaaaatttGTGTTATCGATGTTCTTCAATTTTTAGTGTATATGAAAATATagtacccaatgaattatacATATTTAAGGTTGTTTTAATAAACAATTCGATTCTGCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001882 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01697 all species →	Glyco_transf_92	Glycosyltransferase family 92	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008166 all species →	Family	Glycosyltransferase family 92	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21461 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0070085 all species →	Biological Process	glycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001629191.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001629191.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

9.3Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	4.44	4.98
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.12	4.67
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	5.19	6.31
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	4.14	4.39
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.59	3.97
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.13	4.19
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	3.37	4.02
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	5.16	7.69
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	3.75	4.47
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	3.61	4.92
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.36	3.41
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	5.92	9.28
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	3.53	3.70
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	3.38	5.91
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	3.53	4.55
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	2.93	4.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.98
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.26
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.07
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.67
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.48
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.21
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.31
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.59
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.66
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.39
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.07
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.96
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.97
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.71
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.08
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.19
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.20
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.02
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.22
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.88
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.69
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.57
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.22
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.47
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.42
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.37
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.92
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.40
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.52
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.41
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.35
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.32
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.28
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.50
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.98
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.70
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.64
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.26
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.91
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.24
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.55
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.45
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.59
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.88
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.90
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.