Gene detail

Detailed information of XP_001629690.2 in Nematostella vectensis

Genomic Location: NC_064038.1:4710056...4714464
NR annotation: XP_001629690.2, armadillo repeat-containing protein 6 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001629640.3

TCAGAGGAGTGCGGGCGCTGTAAACAAAAGGGCGCCATTTCTCTCTCAATTTCGATACACTTGTCAAACGCTTTTCCTAAATAATAATAGGCTATAGTCCAAGTGCAGGGATTAATTCATAACTCAACGCCATGAATCATCCAAAGAAGATTTCCCAGGAGACCTTCGATGCCGTAGTTCGTGAAAATATAGAGGAATTCGAGATGGATTTAGACGAAGCCGTTTCTGATGCTATGGAGCAATTTGTTAGTCAAGGCGTTGATTTGAGTAACTTGATTACGAGTTACGTGAGAGATGAGTCGTGTGAGGGCGGACTTAGGCACAGTAACCCTGTGAAAGATGCATTAAGTGAAATCCAAGCCAGCTCAAGCAACGACAACAAGGATCATCTTATCAAAGCATTTGCAAGCTTCCAGGCTGAATGCAACAgtgaaaataatagaaaatttgCTGCCAGCCATAACGCCATCCCgatattgttatcatcattcaAAGCAATCAAGGGTGACAAAGAGACACTCTGTAGAGGTCTTGAGGCTTTTGGCACATTTGTGAATGGTCAAGCTAATATCATTGATAGAGAAACCATTGAGTTTCTGTGTGAATGTCTCAAAGACTCTACCAAGCAAGAGGGGTTATTGGAGGTGGTTCTTATATGTGTAAATCATAGCTGCATCAAGAGTGAATCAAATCGTCAAACGTTTGTCGAACTAGGAACTATTCCAATCCTGATAGATGTTTTAGGGATCCATAAACAAAATTCTTCTGTTATAAAAGAGACATGCTTTGTGCTGCGAGTTTTGACatttgatgatgatatgaGTGTACCGTTCGGTAAAGCTCACGAGCATGCTAAGCAGATTGTTGCTGATAATGGTATCAGTGCCCTAATGGATGTAATGGAAGTTTGTGGGGAAAATGTGGAAGTGGTCAGTGAGCTGTGTGCGACCCTTGGCAGACTTTTCGTAAGGGATGAGTTTTGTAAGGAATTTATTGATATTGGAGGTCTAAAAGTCATGTTAAAGATTCTAGAGGAGAAAATCGACCACCAGGCTGTAGTAAAACAAGTCTGCTTTGTCTTGCGTGTTCTAGCGGGTAATGACGATGTCAAGAAAGCTATTGTAGCAACCCAAGGGATGGCGCTGATTGTTGCATCCATGACCAAGCATGCCAAGCAGGCCTTTGTAGCAGAACAGGGGTGTGCCGCTCTTGCATCTATCGCTCTAAGAATGCCGGATAACTGCGCTGCTATTATCAATGCTGGTGGGCATGAAGTCATTCTAAAGGCAATGCAGATGCACCCAGGAGTTGTAGGAGTGCAGAAACAAGGATGTCTTGCCATCAGGAACCTGGTGGCTCGTAACCCAGAGAATTGTGAGCCAATCCTAGGAGCGGGTGGAGAAGCACAGATTAGATACGCCTACAACACCTATCCTGAATCTCATGACCTGGCCAAGGCGGCCCTGCGTGATCTACAGTGTGATGTGGAGCTACGGGAATTATGGACTGGAAGTGGCCAGGGTATCCAGAGACCTTTTTATGAATGATTGTATTTTGATTCAAGAACAGCCTGCTATATGTCAGGCACCTAgctaaaggggggagggggggggggcgcacaACCATCTTGTTCTCTGCTTGTTTTTATGGcattctccccccccccctttaccTATGCTTAtatagtgtgtgtgtgtgtgtatttttACAGTATATGAACATGTTCTTTTAGATGTATAGATGttgtatcttttttttgtcatctaGCTGCACTTCTAGTACTAATTTATCACCCAATTTCACCAGATTTTGAAATACTTGTATTGGGATACGGGTATTTAGAAGTATGTTAGTgtagaagaaaatatattatGAAACATCGCTTAGATCATAAGCTGGTCTCACTCGCTTTAGAATGTCTATCGAGTATCTATGAAAATGCAAGTCCCGCTACAGCGAGTATCCCTTATACGCGGAATCTGTGTACCGCGTATATTTTTAAGGGAATCGGACTTAGGGAATCCCACAGGAAGGTCACCTGTGGTACCCGTATATAAACTCTTTTATCCAACAGATTATCAGTAGAGAGTATTTCGTTCACTAATATTATGTCATTTTGCATTCCAAGATCCCTTTATTCATTAAAATCCTAGGAAATTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BNU0	Armadillo repeat-containing protein 6 OS=Mus musculus OX=10090 GN=Armc6 PE=1 SV=1
Q6NXE6	Armadillo repeat-containing protein 6 OS=Homo sapiens OX=9606 GN=ARMC6 PE=1 SV=2
Q5RD03	Armadillo repeat-containing protein 6 OS=Pongo abelii OX=9601 GN=ARMC6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009713 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for XP_001629690.2 in Nematostella vectensis.

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22895 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24166	ARMC6; armadillo repeat-containing protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001629690.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

35TPM > 0

16Conditions

7.0Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	6.17	7.03
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.10	5.67
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.75	3.02
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.88	4.39
whole 6 week old aboral regenerate · regenerate uncut	3	3	4.22	6.64
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.60	4.80
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.68	6.10
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	3.48	5.74
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.26	5.35
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	3.46	5.81
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.83	5.14
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.22	5.03
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	3.64	5.73
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.24	6.72
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.80	4.67
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.58	4.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.03
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.88
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.59
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.67
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.65
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.97
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.02
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.63
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.59
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.39
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.87
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.38
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.64
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.35
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.67
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.80
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.10
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.93
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.74
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.71
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.35
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.43
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.81
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.56
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.14
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.25
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.11
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.03
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.64
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.73
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.19
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.72
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.67
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.72
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.73
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.