Gene detail

Detailed information of XP_001629751.1 in Nematostella vectensis

Genomic Location: NC_064037.1:1522257...1530308
NR annotation: XP_001629751.1, flotillin-2a [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001629701.3

CAGGGGCGTCTACCCTTCGTTGTTGTAAACCTCTTTTGAGTTGTCGCTCGTCTTGACGTCCCCTCTTCCTGATAGAAAAACCTCACTTCCTAAAAGCCGCAGGGACATGGGAAACTGTTATACAGTCGGGCCGAATGAGGCTCTAGTGGTTTCTGgtggttgttgtggttctGCCGCGAAGAAGACGGTCATAGGAGGATGGGCTTTTGCATGGGCCTGCGTTACGGATGTCCAGTCGATATCACTTGAGGTTATGACCTTAAACCCAACGTGTGAGGCAGTAGAAACAGCGCAGGGTGTGGCCGTCACTGTGACGGGGGTTGCACAAGTGAAGGTCATGACCGAGCCTCGACTGCTGAAGACCGCATGTGAGCAGTTCCTCGGCAAGACCACTAGGCAGATAGAAAGCGTCGTTCTGCAGACCTTAGAGGGCCATCTCCGCGCTATCCTGGGTACCCTCTCAGTAGAGGAGATTTACAAAGATCGTGAGGCCTTTGCAGCTCTTGTCAGAGAGGTTGCCTCCCCTGATGTTGGTAGGATGGGTATTGAAATCCTTAGCTTCACCATCAAAGATATAGAGGACCATGTGGACTATCTTAACTCTCTTGGGAAAACACAGACTGCTAAAGTGAAAAGAGACGCAGACATAGGTGTGGCTGAGGCTAAAAGAGACGCTGGTATTAGGGAAGCTGAATgtgaaaaacagaaaatggATGTTGTATACGagacacaaacaaacattgcAGACTCCTCCAGAGAGTATCAAATGCAAAAAGCTGCTTACGACCAAGAGGTCAACACAAGGAAGGCAGAGGCTGAACTCTCTTATGAACTACAGGGAAACAAAGAGAAACAAAAGATCAGATCAGAAGAGATCCAGATTGAAGTTGTTGAGAGGAGAAAGCAGATTGAAGTGCAGGAGAAGGAGATCCAGCGAAAGGAGAAGGAGCTGATTGCAGAAGTAAAGAGACCTGCTGAGGCTGAGAGTTATAAAGTGGAGACTTTGGCCCAGGGGAAAAGAACTCAGACAGTGTTCTTAGCTCAAGCAGATGCAGAGAGGATCAAGCTTATTGGTTCATCTGAGGCTTCAGCTATCGAGGCTATTGGTAAAGCAGAGGCTGAGCGTATGAGGCAGAAGGCGGCAGCCTACAAGATGTACGGAGATGCTGCCATGACAGCCCTTATCCTGGAGGCCCTACCTAAGGTTGCAGCTGAGGTGGCTGCACCTCTCGCCAAGACGGGAGAGATTGTGATCATTAATGATGACGGCAACAGTGTGTCCGGTGAACTATCTAAACTTCTTGGGCAACTACCTCCTGCCATCCAGGCTCTAACTGGGACTGACCTCAGTGGAGTGCTCAACAAAATCCCTGGTGCCAGACAAGCATAGATTGCTAGCATAAGAGAGTCCTGACTATATTGGTCCTCTCGTTTAATATTCAGTGTATCATAAAAATCATTATAACGCCACGACGACACAGCCTTCACCACAAATCTTGCACAAAAAAGTGATACCATCAGCTTGGTGTCATATTACTTACATGATGACCCATAGGTTTTAGATGCTTCACCACTAAAACATGTCCTTATAACTAAGGTACCAAAGCGTGAAAACATGCTTAAAAAGAATGGAATCAAAGAGGAGTGGGAAACGACAACCAATCCTTTATGAAAAGGACTATCCACTTGTTTTCTTTCCCCTTCTGGGTGTTTAATCCCAGTGTCTGTAGATTAGGGCTTTCTCTTCTAACAAAGGAATATCGAGCAAATAATTTGCACCAAAAATTTTTAGGAAACCATTTTTAgaacaaaactataaaaaacGAAACTTTGGTCTACTGTATTCACCCTACCCTACTAGTTACTTACAGTGTATATCTGAATTATTATATGAGATGTCTGAAAGTAACATTTACATCTAATGTACTCACAATCAGCATTTTTGAAATTATTGATATTATAACTACTCTTTGAGGCTTTTTTAAGTTATTAGAGGAGTTTTCAAGAGGATGTTTTCAACGATAAAGGACGCTTTCGTAACTGAAAATTGAAAGAAACCCCCGTTTGTAATATACGTAACTACGAATGGGTTTCAAATGttgttaaaaataaatatgtaaTATTCTGCAAATTCCTCTTTGTATGTTGTGGATTTTGTTCTTGTGGTACTGGACTGGTACTGTTCTAATGGTCTTGGATCTGATTAAAtttataaacatttta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O61492	Flotillin-2 OS=Drosophila melanogaster OX=7227 GN=Flo2 PE=2 SV=3
Q14254	Flotillin-2 OS=Homo sapiens OX=9606 GN=FLOT2 PE=1 SV=2
Q60634	Flotillin-2 OS=Mus musculus OX=10090 GN=Flot2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001682 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15975 all species →	Flot	Flotillin	Family	Interproscan
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031905 all species →	Domain	Flotillin, C-terminal domain	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR027705 all species →	Family	Flotillin family	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045661 all species →	Biological Process	regulation of myoblast differentiation	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07192	FLOT; flotillin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001629751.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

271.2Max TPM

190.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	172.40	188.68
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	144.83	189.24
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	199.34	228.20
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	227.89	245.32
whole 6 week old aboral regenerate · regenerate uncut	3	3	172.01	187.12
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	240.39	271.21
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	182.04	190.46
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	172.22	194.16
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	175.32	200.69
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	188.11	202.67
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	203.52	214.61
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	173.94	196.38
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	182.27	210.63
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	193.95	241.04
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	218.12	229.40
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	204.79	236.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	188.68
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	182.31
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	146.19
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	189.24
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	123.14
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	122.11
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	228.20
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	201.52
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	168.30
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	245.32
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	231.86
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	206.47
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	187.12
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	181.04
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	147.86
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	271.21
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	250.78
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	199.19
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	190.46
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	187.42
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	168.24
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	194.16
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	177.85
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	144.65
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	200.69
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	166.44
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	158.82
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	202.67
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	182.43
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	179.22
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	214.61
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	212.11
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	183.85
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	196.38
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	173.67
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	151.78
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	210.63
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	178.96
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	157.23
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	241.04
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	183.72
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	157.08
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	229.40
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	213.94
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	211.02
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	236.17
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	234.04
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	144.15

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.