Gene detail

Detailed information of XP_001630181.3 in Nematostella vectensis

Genomic Location: NC_064040.1:4573239...4587516
NR annotation: XP_001630181.3, AT-rich interactive domain-containing protein 4A [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509689

ATGGCACAGGGAAGCGAAGAGCCTCCCTTCCTGACGGTGGGAACTGAAGTTAGTGCAAAATATCGAGGAGCTTTTTGCGAAGCCAGCATAAAGACTATAAAGAAACTCGTCAAATGCAAGATCCAGTACAAAAATAATACAACTGGGACAGTCAACGATGACGGAGTAAAAGGAGCTTTAAAGGTTGGATCAGTTGTAGAAGTCAAGAATTCTGATGGCCAGTTGGTAGATGGAGTAATCACTAAACTAACTGATGCCAGTGTCTACACAGTTGTATTTGATGATGGAGATGAAAGAACTCTAAGGAGGACATCCCTGTGTTTAAAGGGGGAGCGTCATTTCAATGAGAGTGAAACCCTAGACCATCTTCCATTAACAGATCCTGAGAATTTTGGAACACCAGTAGTTCAAAATGGGAAAAAGCGTAAAAAGAGAAGATTGAGTCAACAAAGTGCAAGTATTGATGATTCTGAAAATGAAGCAGAATCTCCAGCACCAGTAGTGAAAAAGAAATGTCTCTTCAATGATAGCATTGTTGGAAAGGTTGTTGTAGTTGAGCGAGGGACTAAACGGAAATCCCACTGGTTTCCAGCTTTGGGAGTGAGTCCAAGCTCAGATAACATGGAGTTTATCAAATCTAAAGACCACTGCCTAGCAAGATCCTTCAAAGATGGCAACTATCATATTGTCAATGTACGTGATACAAAGGATTTCTCTAAGGATGAAGAACCTGTTAGTACTGCCATTCGAACAGAAAACAGAGTCACCAAGGCTGCTATTGATCGGGCCATTGCATATCTGGAAACTGGGCGTATCCCATCTATCTGGGAAGGGAACAAGTCAGAGGTGATAATGAAGGATGAGGACACAGGAAAAGCAAAGCTAGAAAAGCAGTCTTCCGAGGAGGGGAGTGAAGATGACGAAGACGAGAAGAAAGAGTTCATGACAAAACTAACTGCATTCATGGACGATAGACGAACCCCAATCACTCGTCCTCCAGTGCTGGGTAACCAGGATCTGGACTTGTACAAACTCTATGTGCTGGTGCAGGAATTTGGTGGAATGGAAGAGGTCACCAATCAACAACAATGGAGAAATCTCTACTCCAAGATGGGAATTGCTATTATGCCTCCTAGTGCGTCTCATCACATTAAAATGGCTTATAAAAAGTACTTACAACCATATGAAGAACACCAACTTGGAAAACCCAATCAAGAGCCAGACGAGGATAACGTTGATAGTTCCACCCGTGAAAGAAACACAAGCATGCGAGGCAAACCCACGGAAGATGAGAAAACAGAGGCCCCTCATCCAAGGGAAAGAAGTTCCTCACGGACTAGGCTGGACCGGTCCATGAAAAACAGCAAGCCAGATAAACCTGCCACTCCTGACAAGCCAGATAAACGAGTAAAACCAGTTTCAATGCCAGAGAGTAAACCTGCAGGGCCAAAGAAACCAGACAAGTTGATTCTTCCTGATAGGAGCTCTCCTACTGGTAAACCCTCCAGAGTCCCCACCCCTAGTAAGGCCACGCCCAGCAAGCGAGCTACCACACCTAATAACAAGGGAAAACCTAATAGTAAACCTTCCACTCCCAACCAGCCCCCAACACCAGACAGCAGCGATGACCTCTCAGTTGACAAGAGAGACGCTTCAAGGAGGAGAGGAGAGGATGAGTCTAGCTCTCATCATGATGAAAGCATAGACTCAGAGGTGGATATTGATGATGAAGTGACGTCACCTGAGTCTGAGCTTGCGGTGGATGTGGTGAACAGTCCTGGCAGCCTGTCTGACATCAGTGAGTCCAGGTCTGATTACTGCCCTGAGGATCCAAAGGATTATAATGTGGGTGACAAGATCCAAGTCAAATACGGGCGTGGACGCAATCAGCTTATCTACGAGGCCAAGATTACAACAATTGATGAGAATGCAGAGGAGGGTATTCTTTTTCTGATTCATTATGCTGGATGGAATAACAGATACGATGAGTGGATAAGCCCAGATCGTGTTGTCGGCAAGAGCACATGCCAATCCAGAAAAAAGGGAACCTTTATGGTAAGAGGGATTGAGGTAGCAAGACCAAAATTCCCACCAAAGCCAATGGGTAGAAATCTTCAGAAAGCGATGCACAAGAAGGGGAAGCTGATTCCTCCCAACAGTGGCGCCGGCAAGGCTTCTAATGGCAAAAATGCACCCACCAATGGGAATAAAGCACCTACAAGATCTGCATCACCCTCGGTGACTTCGGCCGCTTCCCCTGGAACAGTGTCACGGCGCACACGCTCTGAGAGGAACTCTTTGCCAGAGTCAGCTAATGGAACATCTGAAGGTGATGCCCTTTCATCTGGGCGTAGTCCACCGACAAAAAGACAGCAAAAATCAGTGACTCCAGAGCCAACTGATTGTGACAAAGCTGAAGAGGTCAAGCCCCTAGTTCCCATTCCTGACAAGAAGCCTTCACTAGAGGAAAATGTTGTGAAGAGTTTTGACCAAGCATTTGAGAAGGAAGATGCCCCTCTAACTTGCTCCAAGAAAGAGGACAAGGAGGTGATTGTTCCTGATCCCCAAGAACCGACAAGTAATGATAACGAGCATGAGAAAAAGGAACCAGAAAAGCCAAAGGAACAGGGAGGTAGAAAGAAAAGCAGGCGAGTACTGAATGGTTTGATTAGAAGCCTGAGCTCCCCGGCATCCATGAACTCAGACTACTCTTTGCAAGAAGATGACCCTGATGCTCCTCCTGTCAAGAAAGTCAAGGTTGAAGAGGAGAAGGACTTGGAGGATATTAAGATTGAGAAGTTATTAGGTGAAAATGTTCCAAGTGAGACTCCAGCAGCTGCGCCACACTCTGAAGGGAGCACCAGTGCTGATGCTGACAAGTTCTGCAGTATGAATGGCCGCATCGAAGAGCAACAGCCACAGGAAGGAGTGGAAGAGAACAAGTCTGAGTCTGAGAATAATCAGAAGGACAACTCTCAGTCGTCCAGTCCAAATGGTAGCACATCCAGCAGTAAAGATGAATGCGAGTCTACTAAAGAGAAACCAGAAAAGCACACTAGCAGACCCAGACATGATAGCAAATCAGACAAGAAAAATTCTGACGACAAACACAGGCGGCACAGAAGGAGAAGAGAAAAGAAAAAGCAGAGGCACCATTCTGGGAATGACAGCACTGGTAGCGACATCCCAGCTAGTCCAGGAATAGCCAACTCTCCTGCCTCCAGACCCTCACCCTCTCGACCGAGAATCAATTTTGATGCTGAGCTAGTTATGATAAAAGCAAACAAAGATAGCTCAGAGAGAATACGACTTTTACAAGAGAAAATAAAGGAGATGAGAAAACTTTATGGATCATTAAAAGCTGAGGTTGCCACCATTGACCGCAGAAGGAAAAGATTAAAGAAAAAGAGAGAAGAACATGAAGCGGATTCTGCCTTACAAGAAAGCAATCACAAGTCATCTAGCTGTGTATCACCTACTCCTCCTCAAGTCGAGTGTAGATAG

Transcript

rna-XM_001630131.3

GCGAGGAGGGGAAACCGAGCGTCTTGTTGTCTTGTGTCGGCCATCATCACTAAATTTCTAGATGTTTGGAGTTTTCTCCTTAAAATTTTAGCGGTTTTTGCTCCGATCTCAAGCTGGACTTAGCTACAGGAAAAAACACTTCGGAGAACATCCCTTATGGCACAGGGAAGCGAAGAGCCTCCCTTCCTGACGGTGGGAACTGAAGTTAGTGCAAAATATCGAGGAGCTTTTTGCGAAGCCAGCATAAAGACTATAAAGAAACTCGTCAAATGCAAGATCCAGTACAAAAATAATACAACTGGGACAGTCAACGATGACGGAGTAAAAGGAGCTTTAAAGGTTGGATCAGTTGTAGAAGTCAAGAATTCTGATGGCCAGTTGGTAGATGGAGTAATCACTAAACTAACTGATGCCAGTGTCTACACAGTTGTATTTGATGATGGAGATGAAAGAACTCTAAGGAGGACATCCCTGTGTTTAAAGGGGGAGCGTCATTTCAATGAGAGTGAAACCCTAGACCATCTTCCATTAACAGATCCTGAGAATTTTGGAACACCAGTAGTTCAAAATGGGAAAAAGCGTAAAAAGAGAAGATTGAGTCAACAAAGTGCAAGTATTGATGATTCTGAAAATGAAGCAGAATCTCCAGCACCAGTagtgaaaaagaaatgtcTCTTCAATGATAGCATTGTTGGAAAGGTTGTTGTAGTTGAGCGAGGGACTAAACGGAAATCCCACTGGTTTCCAGCTTTGGGAGTGAGTCCAAGCTCAGATAACATGGAGTTTATCAAATCTAAAGACCACTGCCTAGCAAGATCCTTCAAAGATGGCAACTATCATATTGTCAATGTACGTGATACAAAGGATTTCTCTAAGGATGAAGAACCTGTTAGTACTGCCATTCGAACAGAAAACAGAGTCACCAAGGCTGCTATTGATCGGGCCATTGCATATCTGGAAACTGGGCGTATCCCATCTATCTGGGAAGGGAACAAGTCAGAGGTGATAATGAAGGATGAGGACACAGGAAAAGCAAAGCTAGAAAAGCAGTCTTCCGAGGAGGGGAGTGAAGATGACGAAGACGAGAAGAAAGAGTTCATGACAAAACTAACTGCATTCATGGACGATAGACGAACCCCAATCACTCGTCCTCCAGTGCTGGGTAACCAGGATCTGGACTTGTACAAACTCTATGTGCTGGTGCAGGAATTTGGTGGAATGGAAGAGGTCACCAATCAACAACAATGGAGAAATCTCTACTCCAAGATGGGAATTGCTATTATGCCTCCTAGTGCGTCTCATCACATTAAAATGGCTTATAAAAAGTACTTACAACCATATGAAGAACACCAACTTGGAAAACCCAATCAAGAGCCAGACGAGGATAACGTTGATAGTTCCACCCGTGAAAGAAACACAAGCATGCGAGGCAAACCCACGGAAGATGAGAAAACAGAGGCCCCTCATCCAAGGGAAAGAAGTTCCTCACGGACTAGGCTGGACCGGTCCATGAAAAACAGCAAGCCAGATAAACCTGCCACTCCTGACAAGCCAGATAAACGAGTAAAACCAGTTTCAATGCCAGAGAGTAAACCTGCAGGGCCAAAGAAACCAGACAAGTTGATTCTTCCTGATAGGAGCTCTCCTACTGGTAAACCCTCCAGAGTCCCCACCCCTAGTAAGGCCACGCCCAGCAAGCGAGCTACCACACCTAATAACAAGGGAAAACCTAATAGTAAACCTTCCACTCCCAACCAGCCCCCAACACCAGACAGCAGCGATGACCTCTCAGTTGACAAGAGAGACGCTTCaaggaggagaggagaggatgAGTCTAGCTCTCATCATGATGAAAGCATAGACTCAGAGGTGGATATTGATGATGAAGTGACGTCACCTGAGTCTGAGCTTGCGGTGGATGTGGTGAACAGTCCTGGCAGCCTGTCTGACATCAGTGAGTCCAGGTCTGATTACTGCCCTGAGGATCCAAAGGATTATAATGTGGGTGACAAGATCCAAGTCAAATACGGGCGTGGACGCAATCAGCTTATCTACGAGGCCAAGATTACAACAATTGATGAGAATGCAGAGGAGGGTATTCTTTTTCTGATTCATTATGCTGGATGGAATAACAGATACGATGAGTGGATAAGCCCAGATCGTGTTGTCGGCAAGAGCACATGCCAATCCAGAAAAAAGGGAACCTTTATGGTAAGAGGGATTGAGGTAGCAAGACCAAAATTCCCACCAAAGCCAATGGGTAGAAATCTTCAGAAAGCGATGCACAAGAAGGGGAAGCTGATTCCTCCCAACAGTGGCGCCGGCAAGGCTTCTAATGGCAAAAATGCACCCACCAATGGGAATAAAGCACCTACAAGATCTGCATCACCCTCGGTGACTTCGGCCGCTTCCCCTGGAACAGTGTCACGGCGCACACGCTCTGAGAGGAACTCTTTGCCAGAGTCAGCTAATGGAACATCTGAAGGTGATGCCCTTTCATCTGGGCGTAGTCCACCGACAAAAAGACAGCAAAAATCAGTGACTCCAGAGCCAACTGATTGTGACAAAGCTGAAGAGGTCAAGCCCCTAGTTCCCATTCCTGACAAGAAGCCTTCACTAGAGGAAAATGTTGTGAAGAGTTTTGACCAAGCATTTGAGAAGGAAGATGCCCCTCTAACTTGCTCCAAGAAAGAGGACAAGGAGGTGATTGTTCCTGATCCCCAAGAACCGACAAGTAATGATAACGAGCATGAGAAAAAGGAACCAGAAAAGCCAAAGGAACAGGGAGGTAGAAAGAAAAGCAGGCGAGTACTGAATGGTTTGATTAGAAGCCTGAGCTCCCCGGCATCCATGAACTCAGACTACTCTTTGCAAGAAGATGACCCTGATGCTCCTCCTGTCAAGAAAGTCAAGGTTGAAGAGGAGAAGGACTTGGAGGATATTAAGATTGAGAAGTTATTAGGTGAAAATGTTCCAAGTGAGACTCCAGCAGCTGCGCCACACTCTGAAGGGAGCACCAGTGCTGATGCTGACAAGTTCTGCAGTATGAATGGCCGCATCGAAGAGCAACAGCCACAGGAAGGAGTGGAAGAGAACAAGTCTGAGTCTGAGAATAATCAGAAGGACAACTCTCAGTCGTCCagtccaaatgGTAGCACATCCAGCAGTAAAGATGAATGCGAGTCTACTAAAGAGAAACCagaaaagcacactagcagaCCCAGACATGATAGCAAATCAGACAAGAAAAATTCTGACGACAAACACAGGCGGCACAGAAGgagaagagaaaagaaaaagcagAGGCACCATTCTGGGAATGACAGCACTGGTAGCGACATCCCAGCTAGTCCAGGAATAGCCAACTCTCCTGCCTCCAGACCCTCACCCTCTCGACCGAGAATCAATTTTGATGCTGAGCTAGTTATGATAAAAGCAAACAAAGATAGCTCAGAGAGAATACGACTTTTACAAGAGAAAATAAAGGAGATGAGAAAACTTTATGGATCATTAAAAGCTGAGGTTGCCACCATTGACCGCAGAAGGAAAAGAttaaagaaaaagagagaaGAACATGAAGCGGATTCTGCCTTACAAGAAAGCAATCACAAGTCATCTAGCTGTGTATCACCTACTCCTCCTCAAGTCGAGTGTAGATAGCATGCAATCTTCCCAATAGTCCTCTCCCATAATTCCACAACATACGATACATTGTGagtgatttatttttaatcttttAACCAAAACTTTATAACAATTCATTCTCATTCTCTATCATATTTTCTctagtgaaaaaaatatggatCTGATGGCAATAAGGAAGATTGAAATTGTCAGAGTATTTTAGTATCTTTTTTGCCATGTTTTTCAATGTATGTTTATTGGTAGCTCATGGCTTTTTACCCATCATTCTGAGTATATATACATTCTGATGAGTGAACTCAAATCAGACaaagacttgaataatatatatatcCTGATATACTAATGATAGAATAAGCTCTTTTGTGAGGGTGTATAATTATAGCAGAGTGGccactaataataataagtggGCTAAACGGTGGCATAAATGTGAGAATTCTCTCTAATTGGGAATATGCCTGTCACCAGTAAAGGGTTGTGTGTCCTTGGTTGCTAACTTCTCAATTAATCCATTAAATGGGATAAACATGGATAACATGCACCAACCTTCTAGCATATGCcttattatttattccttGATTTGCTACCAATAACAAACCAATTTTGTGTTTAGCTTTTAAAGAAGTTGCCGaaaagcttttaaaaattGATACATTACCCACCCATATGTGAGCATTTTCATGTGGGGTCCATTTTAACCATCTAATGTATTGAAGGTAGTAGGATGTAAAGTATTTAGTTTTCCTTGTGTATATTGAGATATTTATAATCGTTAGATGGCCACTGATAAGATATGGAAAAAGAGAATGGAAGTGTCATTTCTTCTAACTTTCTTAAGTGAGTGATAGGAGATATTTTTGTTAGCCACTGCAGCTGTTTGGACTGTGGTATATAGTAAAAACggatttgtttctttttttttgcaataatCTTAATGTGACCTTGTATTAAGTTCATTGCCATTTGGCATTGAGACATGCTAGAAAAGGCATTTGTTGATAATAGTTCTATGCTGAGCTACTATGTAAAATTCATATCTATATTATCAACACAGACTATTAGCAAATTAGATGTATATTGAGGAAAGAAATATACTTATTTCTCAGTGAATaacattttaattaaaatccTAATAAGAACTGGTTTTATCCAATCATAGGTAGGAGCCATGGCTACAGTAAAATGTGTTGCCAAGATTATAAAGCATTCAATGAAATCAATgctatttttatagaattctCAATTATTGAGCTCCCCTAATGCAATCACCATACAAACTGCACTTTAAACATATAAAAGTCATAGCGTTAATCTATAATTATActatattgatattttttatttaattattgttttgttaaacttgtacacattttttttatttctatttcattGATACTGGTATGAATTACTGTACATAAACTATATCTACATTATAGTCTGTAATGTGCATAGACAAATCAATGGTTTGAAACTATTAGCTGTTTATGTCTGTCCTGGGAAGCCTTACTTAGGCTACTAAGCATTCTTATACCCTGTCATACAATACTCTCATTGGTGGATATTCATATTCCATGTCTGTTATATCCTATACAAGGAGATCTTCTGCAAATGATCCAAAATGCGTATATCTATACCTGTACTAGATAAATTGTCTGTCCTTAATGATGGACATGggtattattataaaataactTAACAGAACTAACATGGATAACATTATCAAGCtagtagaaaaaaacacttttgtaAGGTAATGCAAAAGTGAAAGCTGTACAATAGCCTGTAGAATATGCTGTGAATTGGAATGTCTTATTTTTAACTATGCTATCGTTTTGAGCACCATATTTTAACAGTGCCATCTAATTTATTTCATGTGAATAAATGGCAGCTGAACCCTTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29374	AT-rich interactive domain-containing protein 4A OS=Homo sapiens OX=9606 GN=ARID4A PE=1 SV=3
F8VPQ2	AT-rich interactive domain-containing protein 4A OS=Mus musculus OX=10090 GN=Arid4a PE=1 SV=1
A2CG63	AT-rich interactive domain-containing protein 4B OS=Mus musculus OX=10090 GN=Arid4b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08169 all species →	RBB1NT	RBB1NT (NUC162) domain	Domain	Interproscan
PF11717 all species →	Tudor-knot	RNA binding activity-knot of a chromodomain	Family	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR012603 all species →	Domain	ARID4A/B, PWWP domain	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR025995 all species →	Domain	RNA binding activity-knot of a chromodomain	Interproscan
IPR051232 all species →	Family	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13964 all species →	RBP-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001630181.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.