Genomic Location: NC_064048.1:7635504...7643437
NR annotation: XP_001630372.2, prosaposin isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5509875 |
| Transcript |
| rna-XM_001630322.3 |
| Protein |
| XP_001630372.2 |
| UniProt accession | Description |
|---|---|
| P10960 | Prosaposin OS=Rattus norvegicus OX=10116 GN=Psap PE=1 SV=1 |
| P26779 | Prosaposin OS=Bos taurus OX=9913 GN=PSAP PE=1 SV=3 |
| P07602 | Prosaposin OS=Homo sapiens OX=9606 GN=PSAP PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002805 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02199 all species → | SapA | Saposin A-type domain | Family | Interproscan |
| PF03489 all species → | SapB_2 | Saposin-like type B, region 2 | Family | Interproscan |
| PF05184 all species → | SapB_1 | Saposin-like type B, region 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003119 all species → | Domain | Saposin A-type domain | Interproscan |
| IPR011001 all species → | Homologous_superfamily | Saposin-like | Interproscan |
| IPR008138 all species → | Domain | Saposin B type, region 2 | Interproscan |
| IPR008139 all species → | Domain | Saposin B type domain | Interproscan |
| IPR051428 all species → | Family | Sphingolipid Activators and Surfactant Proteins | Interproscan |
| IPR007856 all species → | Domain | Saposin-like type B, region 1 | Interproscan |
| IPR008373 all species → | Family | Saposin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11480 all species → | SAPOSIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006629 all species → | Biological Process | lipid metabolic process | Interproscan |
| GO:0005764 all species → | Cellular Component | lysosome | Interproscan |
| GO:0006665 all species → | Biological Process | sphingolipid metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12382 | PSAP, SGP1; saposin | - | Exosome | ko04147 | deepkoala |
Transcript abundance of XP_001630372.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
