Gene detail

Detailed information of XP_001632703.1 in Nematostella vectensis

Genomic Location: NC_064042.1:11871431...11891086
NR annotation: XP_001632703.1, intraflagellar transport protein 80 homolog isoform X1 [Nematostella vectensis]
Species abbreviation NVECT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5512376

ATGAGATTGAAAACACACTTGCTAAAAGAATCGAAACATAAGGAGCTTGTGAGTTGTGTTGGATGGACCACAGCCGAGGAACTCTACTCTAGTGGAGATGACCACAGTATTCTTAGATGGAATCTCCTATCAGATGAGACGACAGAAGTAGTCAAACTACCACAGGAAGTGTTCCCCACTGATCTGCACTGGTTCCCTAAAGTTCTCGGCAATAAGAAACAGAGCCAGTTGGAATTAATGGTGCTAACAGCCACAGATGGGAAGTTCCATTTGATATCACGTAATGGCAGAGTGGAAAAATCAGTTGAGGCCCACAGGGGGGCTGTGCTATCTGGTCGCTGGAGTTATGATGGTTCTGCAATGGTCACAGTGGGAGAAGATGGCCAAGTGAAGATTTGGTCTCGCAGTGGAATGCTTCGCTCCACTCTCATGCAAACAGGTACCCCTGTCTATTCTGTTGCATGGAGCCCAGACTCAGATCACATCTTGTACACAAGCGGCAAACAGCTTGTCATCAAACCCCTACAGGCCGCAGCTAAGCCAATCCAGTGGAAAGCCCATGAAGGAATAGTTCTAAAGATTGACTGGAATCCTATCAATAACCTCATTCTGTCTGGTGGAGAAGATTGTAAATACAAGGTTTGGGACAGCTACGGTCGTGTCCTGTACTCCAGTGCCCCCCATGAGTACCCCATCACCAGCGTGTCCTGGGCCCCAGATGGTGAGCTGTTGGGTGTCGGCTCCTTCAACACGCTAAGGCTTTGTGACAGGACAGGGTGGTCCTACGCCCTGGAGAAGCCAAACACAGGGTCCATATTCAACATTGCATGGTCCAATGATGGGACTCAACTGGCAGGAGCTTGTGGGAATGGACAAGTGATATTCGCCCACGTCATCGAAAGGCGCTTGGAGTGGAAAAACTTTGAGATGACTGTCACAGAAAGGAAGAGCATTAATGTAAGGGACGTTGTGAATGACAGCAAAGACACTCTTGATTTCCGTGACCGGATTATCAAGACTGCACTGGGTTTCCAGCACCTTGTGGTTGCAACCTCATCACAGTGTTACATCTACAGTGTGAAGAACTTCAACACCCCCATGATCTTCGACCTGAAGAATGGCAACATATCGCTCATTGTTCTTTCTAAAAGACATTTCCTTGTGGTCGATGACGCTGGTTTGCAAATATACTCATACGAGGGACGTCTTATTAGCGCACCCAAGTTCCAGGGGCTCAGAACAGACGTGCTGAACGAACAGACTGTGTCCCTCAGCAACGACACCCTTGCAATTAAGGACCGCAAAGACGAAAAAGTTATCTACCTGTTTGAAGCTTCGTCTGGGAGAGCTGTTGGTAGTGGAGAACCGCTGACACACACCATGGAGGTGATGGAACTGGCCCTGAACCAGTGTGGACCCACCGGTGATCGCCAGCTCGCCATCATCGACAAGAACAGGGATCTGTATCTTACCCCCGTCAAGCATATTGGCCCCGCTGCCAAACTTGTTAAACTTGGTACCATGGTGACGAGTATGGCGTGGAATGACTCCACCAATATGCTGGCAGCTCTCCAGGACGGTCGCTTCACCGTCTGGTATTACCCCACGGCCGTGTTTGTCGACCAGGATATCCTGCCGAAAACTTTACTGGAAAAGGACTCCAGCGATTTTGGGAAAAACCCTCATATCTTGAACTTCCTCGAGAATCACTGCAACATGCGACGAGCCGATGGTTCCCTTTGTAGCACCATAATCTCACCATACCCAGCAATGCTGCACAAGTACTGCTCCGATTCCAAGTGGGATGATGCGGTCCGGCTGTGTCGCTTCGTCAAGGACCCTGCGCTATGGGCGTGCCTGGCTACCATGGCTGCGTACGCAAAGGAACTAAACACAGCAGAGACGGCCTACGCTGCTATTGATGAGGCTGACAAGGTCCAGTATATAAACCACATCAAGGAGATCCCAACCAAGGAAGGCCGTAACGCCGCCATGGCCCTGTTTTGTCGACAAGTCATGGAGGCGGAGACGATCCTGCTACAAGCTGGACTTGTGTACAGGGCCATTCAGACAAACATTGATCTCTTTAACTGGGATAGGGCGTTGGAGCTCGCTGTTAAGCACAAGACCCATGTAGACACTGTCTTGGCCTTCAGGCAGAAGTACCTGGACAATTTTGGACGCAAAGAAACGAGCAAGCGATTCTTGCAGTTTGCTCAGGGGGTCGAGGTGAACTGGGAAAAAGTGAACGCAAAGATCGAGGTAGAGTTGGAGAAAGAGGCGTCGAGACCTGGAGCCAAACCTTACTCTGGTTGA

Transcript

rna-XM_001632653.3

CACTCCTCCACGGATTTCGCAATCGCCTGGCTATTATTCTTACTGTGTAATGGCGGCCTAGTCGCCATCGAAAAGTACTAAGGACATTTTCGCCGCGATTTGTGGTCCTGAATTAACACCAAATCCTTCATTATACATCAGTACAAACGAAAGAAACACTACATCTTTACTGGGGGTCTAACGATGGTGTTTTGAGTGAAATTTCTTGGTGAAATCAACGAGTGAAGTTTGTTTACAGCGGTTGTCAAGTtgaaaaatactaaaaaaaaataccaagatGAGATTGAAAACACACTTGCTAAAAGAATCGAAACATAAGGAGCTTGTGAGTTGTGTTGGATGGACCACAGCCGAGGAACTCTACTCTAGTGGAGATGACCACAGTATTCTTAGATGGAATCTCCTATCAGATGAGACGACAGAAGTAGTCAAACTACCACAGGAAGTGTTCCCCACTGATCTGCACTGGTTCCCTAAAGTTCTCGGCAATAAGAAACAGAGCCAGTTGGAATTAATGGTGCTAACAGCCACAGatgGGAAGTTCCATTTGATATCACGTAATGGCAGAGTGGAAAAATCAGTTGAGGCCCACAGGGGGGCTGTGCTATCTGGTCGCTGGAGTTATGATGGTTCTGCAATGGTCACAGTGGGAGAAGATGGCCAAGTGAAGATTTGGTCTCGCAGTGGAATGCTTCGCTCCACTCTCATGCAAACAGGTACCCCTGTCTATTCTGTTGCATGGAGCCCAGACTCAGATCACATCTTGTACACAAGCGGCAAACAGCTTGTCATCAAACCCCTACAGGCCGCAGCTAAGCCAATCCAGTGGAAAGCCCATGAAGGAATAGTTCTAAAGATTGACTGGAATCCTATCAATAACCTCATTCTGTCTGGTGGAGAAGATTGTAAATACAAGGTTTGGGACAGCTACGGTCGTGTCCTGTACTCCAGTGCCCCCCATGAGTACCCCATCACCAGCGTGTCCTGGGCCCCAGATGGTGAGCTGTTGGGTGTCGGCTCCTTCAACACGCTAAGGCTTTGTGACAGGACAGGGTGGTCCTACGCCCTGGAGAAGCCAAACACAGGGTCCATATTCAACATTGCATGGTCCAATGATGGGACTCAACTGGCAGGAGCTTGTGGGAATGGACAAGTGATATTCGCCCACGTCATCGAAAGGCGCTTGGAGTGGAAAAACTTTGAGATGACTGTCACAGAAAGGAAGAGCATTAATGTAAGGGACGTTGTGAATGACAGCAAAGACACTCTTGATTTCCGTGACCGGATTATCAAGACTGCACTGGGTTTCCAGCACCTTGTGGTTGCAACCTCATCACAGTGTTACATCTACAGtgtgaAGAACTTCAACACCCCCATGATCTTCGACCTGAAGAATGGCAACATATCGCTCATTGTTCTTTCTAAAAGACATTTCCTTGTGGTCGATGACGCTGGTTTGCAAATATACTCATACGAGGGACGTCTTATTAGCGCACCCAAGTTCCAGGGGCTCAGAACAGACGTGCTGAACGAACAGACTGTGTCCCTCAGCAACGACACCCTTGCAATTAAGGACCGCAAAGACGAAAAAGTTATCTACCTGTTTGAAGCTTCGTCTGGGAGAGCTGTTGGTAGTGGAGAACCGCTGACACACACCATGGAGGTGATGGAACTGGCCCTGAACCAGTGTGGACCCACCGGTGATCGCCAGCTCGCCATCATCGACAAGAACAGGGATCTGTATCTTACCCCCGTCAAGCATATTGGCCCCGCTGCCAAACTTGTTAAACTTGGTACCATGGTGACGAGTATGGCGTGGAATGACTCCACCAATATGCTGGCAGCTCTCCAGGACGGTCGCTTCACCGTCTGGTATTACCCCACGGCCGTGTTTGTCGACCAGGATATCCTGCCGAAAACTTTACTGGAAAAGGACTCCAGCGATTTTGGGAAAAACCCTCATATCTTGAACTTCCTCGAGAATCACTGCAACATGCGACGAGCCGATGGTTCCCTTTGTAGCACCATAATCTCACCATACCCAGCAATGCTGCACAAGTACTGCTCCGATTCCAAGTGGGATGATGCGGTCCGGCTGTGTCGCTTCGTCAAGGACCCTGCGCTATGGGCGTGCCTGGCTACCATGGCTGCGTACGCAAAGGAActaaacacagcagagacggCCTACGCTGCTATTGATGAGGCTGACAAGGTCCAGTATATAAACCACATCAAGGAGATCCCAACCAAGGAAGGCCGTAACGCCGCCATGGCCCTGTTTTGTCGACAAGTCATGGAGGCGGAGACGATCCTGCTACAAGCTGGACTTGTGTACAGGGCCATTCAGACAAACATTGATCTCTTTAACTGGGATAGGGCGTTGGAGCTCGCTGTTAAGCACAAGACCCATGTAGACACTGTCTTGGCCTTCAGGCAGAAGTACCTGGACAATTTTGGACGCAAAGAAACGAGCAAGCGATTCTTGCAGTTTGCTCAGGGGGTCGAGGTGAACTGGGAAAAAGTGAACGCAAAGATCGAGGTAGAGTTGGAGAAAGAGGCGTCGAGACCTGGAGCCAAACCTTACTCTGGTTGATTTCTCTATAAAGGACTTTGAACAGGCCTTTAAGTGGCCAAATTAACATTCCCATGCTACGTCACGTCATGGTCTAGTCATACAAGCCTGTCACGTCCGTCCACCGTAAAGGCTGGTGTAGACAACACGAATTAGTCGTATGTGACCTGCCTACGACATGTCTATGCCTTGAATTATACGCTACGACTGTCGTAGTCGAACATCGTAGGTTGATTTACGATCCACGATTCAAGTTGTAGGTGTCGtaggcaggtcgcatacgactaaattgtgctgtctaaatcagccttaGCAAAATCTAAGCTGGCAAGAGAGGAAGTTTGTAAAATAAGCTTGTGAATAATAAACTTATATTAAgagtt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66HB3	Intraflagellar transport protein 80 homolog OS=Rattus norvegicus OX=10116 GN=Ift80 PE=2 SV=1
Q8K057	Intraflagellar transport protein 80 homolog OS=Mus musculus OX=10090 GN=Ift80 PE=1 SV=1
Q9P2H3	Intraflagellar transport protein 80 homolog OS=Homo sapiens OX=9606 GN=IFT80 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005758 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24098 all species →	OUTER SEGMENT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19678	IFT80; intraflagellar transport protein 80	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.