Gene detail

Detailed information of XP_001633129.2 in Nematostella vectensis

Genomic Location: NC_064047.1:1029466...1031658
NR annotation: XP_001633129.2, glycoprotein endo-alpha-1,2-mannosidase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001633079.3

AACGCAATATTGCAGTCGCTAGAAGTTATTTACAATATGGCGGCCGCGTGACTTATtgagaacatttttttttcaattcagtTATTTTCAATATGATTTGGCAGTGGAATGAAATTCAATAGTCTTAAGGAATGTTAACAAACGCTGATACTGGATTTAGATgacattttagaaaaaaatatagcaaGACAATTTTAACTAAATTTCATATGTTCAAAAGAAAGACAAGATTGCTTCAGTCTGCGATATATATTATTGGTCTTCTTACCGTCATTGCTTTAAAAGGCTTATAAAATTTGACTTTAATGCGAAGATGCCTCGCCTCCTACGACTAAGTAAACGAGTCGGGGTTCTTGCAATCGTGGCTATGCTGTTTATAACTGGATGTTTTGTGACGATGCAAAAGCTGAGTTTAAACGAAAGAAAATCAGAAATAACTCTTGAATCTGCACTTAATGTCAAAGAGGATAAAGAAGCAATAGGTTTACCTGACACAATTCTAAAAAGTCGTATTGCCTTTAAGACTGCAAATGTTCTCAGAACGACAGACCACAGCAAGGAAATCTTGAAAACTGAAAAAGTATTGAGTGATGTGAACCAAGTGCCAGATGTTAACACTGTGGGTACGGTGACAGGGCTGGCAACAGTTGAAGTTCCTCCAAGACCTAACTATAACGTTCATATATTTTACTACGCTTGGTATGGCAACCCTGAAGTGGATGGCAATTATATGCACTGGGATCACAAATATTTATCCCATTGGATTCCAGAGATTGATCAGCGTTATCGGCATGGGAAACACAACCCCCCTGACGATATAGGGTCAAATTTTTACCCAGCACTTGGACCGTACAGTTCCCGAGACCCAAAAGTTATTCATGATCACATGAGGCAGATGTGTGCGGCTGGTGTTGGGGTGATGGCTTTGTCCTGGTATCCACCAGGAAAAGCAGatgatcagggattttactCAGATAAAGTTGTGCAACTTTTGTTAGATATTGCCCACCTGTATGACATGAAAGTGACTCTACATATTGAGCCTTACAATGGCCGCAATGATGAAACTCTTCACCGAGATGTTAAGTacatcatagacaagtattcCACCCACAATGCATtttataaatataaacataaagATGGTAGGATACTGCCCTTTCTCTATGTTTACGACTCATATAGGACTTCTGCGTCAGACTGGGCAAGGCTTCTTAAGCCTGAAGGGTCCCACTCAGTGCGCAATACAAAATATGACTGCATTTTTATTTCCCTTATGGTGGAATCTACCCATAGAGACGCTATAACAATTGGCGGCTTTGATGGCTTCTACACTTATTTTGCTACAGATGGCTTCACTTATGGCTCAGCATGGCGCAGATGGGGGCAACTTGCATCCTTTGCAAGGCAAACAAACACACTCTTTATCCCAAGCGTTGGACCTGGATACATTGACACCAGTGTGAGGCCATGGAATTCTAAAAACACCCGACCTCGTCTGAACGGAGAGTACTATAAGAAGAGTTGGACTGCAGCATTGAGTGTACATCCTGAAATTGTGTCAATCACGTCCTTTAATGAGTGGCATGAAGGGACGCAGATTGAGAAAGCCATACCTAAGTCAGTGCTTGGACAGGTTTACAACAATTACAGCCCTAATGAGCCTGACTTTTATATTAAACTGACAAGggaatttgtaacaaaattgGCTCATAAATAGCACTTCCTTTGCAGGTATCTCATATTTCTATCAGATCGAGTAGTCTGATTTATCAGATGGCACATGATCGTTTGTTTCACTTCCTATCCCTTTCCAGAGAGGAAGTTAAACGAACAATCACGTGCCATCTGATAAATCAGGCTACAGATCAAGGTGAGGGCTTTTCATAGGCGGGTTCCCAAGGGGGTTGCGCAGTCCTAGGTataatatggaaaaagcatagtatttcaAGATTCctcaataagaaataacctaCTTTTTGGCTGCCAAGGGTGTTGTGcgtgcgcaccccccccccccctttgtatGCGCCTGTATCATGCGCCCACCCCCCGTAGATTTTCTCTCTCCTCTTTGTTAGTTACTCACGACATTTCACATCTTAATTGGAGTTCCCTACTATATTTTGTGTTTAGCGTATTAAGAAACAATTTAACATTGACTAAGTATCTTAATAAAAAGGCTCAATTCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NXH2	Glycoprotein endo-alpha-1,2-mannosidase OS=Mus musculus OX=10090 GN=Manea PE=2 SV=1
Q5RD93	Glycoprotein endo-alpha-1,2-mannosidase OS=Pongo abelii OX=9601 GN=MANEA PE=2 SV=1
Q5GF25	Glycoprotein endo-alpha-1,2-mannosidase OS=Rattus norvegicus OX=10116 GN=Manea PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16317 all species →	Glyco_hydro_99	Glycosyl hydrolase family 99	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026071 all species →	Family	Glycosyl hydrolase family 99	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13572 all species →	ENDO-ALPHA-1,2-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016798 all species →	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15538	MANEA; glycoprotein endo-alpha-1,2-mannosidase	EC:3.2.1.130	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001633129.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

8.4Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	3.07	3.54
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.32	2.85
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.10	3.46
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.42	2.68
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.23	2.84
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	1.86	3.07
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	3.20	4.50
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.99	3.21
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	3.22	3.61
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	3.28	4.25
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.15	2.26
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.60	4.62
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	2.71	3.25
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	2.46	3.92
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	3.17	3.97
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	3.56	8.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.54
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.03
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.64
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.85
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.16
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.94
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.46
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.94
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.88
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.68
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.31
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.26
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.84
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.95
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.91
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.07
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.50
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.50
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.65
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.45
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.21
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.89
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.86
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.61
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.07
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.99
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.25
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.97
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.64
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.26
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.25
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.93
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.62
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.19
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.25
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.18
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.69
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.92
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.45
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.97
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.85
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.68
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.42
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.25
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.