Gene detail

Detailed information of XP_001633645.2 in Nematostella vectensis

Genomic Location: NC_064046.1:3242756...3251350
NR annotation: XP_001633645.2, coiled-coil domain-containing protein 102A [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001633595.3

ttttgggCTAAAGATCAGGCTGATTTCGTAAGCGATTGGCCAGCATTTGGTGAACACAGTCACCTTGAAAGAAATCCATAAGGGTTAGGATTACACTGGAGAAATACTAGAGTCTGGCGGCCTAAGGGCAACCGTCTCACGGTCACAAACCCTCAATACACGCGCCAAAATTTTCCCGACAGTGAATGATAGCGCTCACAACATCTCAATAAGCGACGGAATTTACGATATATTTTACATCAGAAGCATTGTTGCGAGATAACGATCTGATCTCTTGCTCTGAACTTGACGTGTTGTCAGTAAGAAAGGTAAATATTTGGAAGACAGGTTATGTTGTTTAAAATATGACTTTGGCAAGATTTGTCTGGATAATTGATCATTGCTCTCACCAACTCGAAGCATTTTGAGTGGAACGTTTCGAAGTTGAAAGACAGTACAGCTTTGTACTTAGCTGGTGAGGTATTATCTCGCTGTAGAGTTTGTTTACACCAATCAAGAGGAGAAAGAGTGTTTTATTGAAAGAAAATGAGTTTGTCATCGGGATCTGGAACCCCGGAGTTGGAGAAAATGTCTGGTGAAGAACCGAGTGGGGATGTCTTACTTCAAACAAAGTACCCTGAACCTTATCCTGAAGACTCGGAAGCAAGGCAAGAGTTGAAAGAGCGGGAACTTGAGGAGGCGAGAGCCAGAGCCGCACAGATGGAGAAAACCATGCGGTGGTGGTCAGATTGCACGGCAAACTGGCGCGAGAAATGGGGGAAAGTTCGCGCAGAACGCAACAAAGCACGCGAGGATAAcagacaactaaaactcaagATTGAAGCGCAAGCCAAGGATATCGTGACACTAAAACGCGAGAGACAAGAAGCCTTGGAAGTAAATGCTCGTTTAGAGAGGGATATTGATAAATTGGAGAGAGAATTAAAAAGGGGGAAGCGTGTGTTGCCGTCCGCTCGCGTGGAACCCTCCTTGAAGTCGGACGGAACTCAGGAAAGTGTTTACGATCGGACCGTGCCGCGAACGGGCGCTGAACAACAATTTATCGATCAGATTCTCGAGAAGAACGATCTTTACGAGAGGGAAAGATTGTCGCCACGAGGGGAAAGACTATCCCCGAGAGAAAGTGGAAAGAGTCTCAATAACAATGACGAATTTTCACAAGATAATATCAAGGAACTCAAAATGTTATATCTCAAGCTCGAAGAAACACAAAGATTGCTCACTGAGGAAAAAAGCTCGAAATCCAATCTCCTGGAAGAAATTGAGTGTCTTCAGTCTGATTTGATGGCAGCTAAACTCAAGAACGAAGAATTGATGGCAAATCGGACGGGTACACAAGAACAGCTGACCAAGCTCCGTAGTCAGTTTGATCAGGAGGTGAAGTCACTGAGCGCAGATCTAGAAGATGCTTATGATTCACCTGTTATCTCCAAACAAGTCAAAGGTCTCAGGGCAGAGATTGAGCGACTTCAAATCGAGAATTCGCAAGAATGGGGCAAGCGAGAGAAGCTAGAGAGCGAAAAGCTCTCTTTGGAGAGGGAGAACAAGAAACTCAAGCATCAAATCGAGGATTTGGAAAGTCTACTGAGCCATAAAACAGCACGCGCAACTAAACTCCTAGATACTGACATGAAAGAGATCCAGAAAAAGCTAGACGAGAAGAACGCTgaACTAGTTGAGATGAGACACGCTTACAACAAACTCAAGAAACAGCTGCAAGAGAAGACCGCTGACCTTGATCACTCGCAAAAGAGAGTCGAACAGCATGACGCGGAGGTCAAGAAACTTCGCGCACGCGTAGAAGAGCTGAAGCAGGAGCTCGCCAAGGCTGAGGACGAGACTGACGTGCAAGCAAACAAGGTTCGTAAGATCCAGCGGTCTCTCGACGAGCAGACGGAGCGCGCCGACAGCTTACAAGTACAAGTGGAGCATCTCACATCACGGCTGCGCACTACATCGGTCAGCGGTCCTCCGGTTAAGAAATTTGGACGTGGCAAAGCATCACGGTCTATATCACTGCAGCTCCCGCTGTCCTCTGACAGTGACGAGAATTACTAGAAGCTTCTCTGTGTAGATGTCATATCAAAAATACACCTGAGCAGGGCAACTAAAGAACTATACCATGTCACCAATCATCACTATACCATGTGACCAATCATCACTATACCATGTGACCAATCATCACTATACCATGTGACCAATTATCATGTCTTGAAGATGAAATGATTCAAGGTTTATCAGAAATACAATGGACAACAGTTGATGGCCAGATTCGCGATTTCATTTTTGTATATATTACCATAGTCTCAATCTCTACCAAGTAATTGTGCAAAATCATCTCAAGCCGGATTGATTTCGCTGCATTTACTCGTGTTTGCATTTGCAACCCGACGAAGGGACCCGATACACGTGAGGCCCGAGATTAGAAGAGCCGATTAGAATTATCACCTCTGCCACAGTTTACTTCAAGACGTAATTAAATGTGCTCTGGACACTCATGAATGGACTCGATTGCTTAATCTGTTGTGAAGTGTAAGTAGTTTGAAACAATTGATGGAAATCTTCTTCTACAAATCGCTATGAATGAATCCCAAAGAAGTGACTACCTTACATCGCCACACTTGACCGGCTACCCATAagacaaattttgttttcttactataaaatatcttgattTCTCTTATTGAATGTCATGATTTTTTAACCAAGTagatttcaaattattttggtactttGGTGCTTATTTTTTGGTATCTTGGTCCTTCCTTTTTTGGATAAGTTTAGTTTTCTTCCTAAAATAACTCTATCCCTCATTGAatgttattttaattttatggaACCTTTTCAATGAAATCTAGAGCATTGTGTCGTCTTTGAAGTGTTGTTGATCAAGtctggatattctatagccctctcaattacttcaaaataaaaatgtttaaacaATATGATAGCATAAATAGATATTGTTTTTTACATTGCATTtacataaatgaaataataaatttaacCTAAGTTAATGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFL0	Coiled-coil domain-containing protein 102A OS=Xenopus laevis OX=8355 GN=ccdc102a PE=2 SV=1
A0JNH6	Coiled-coil domain-containing protein 102A OS=Bos taurus OX=9913 GN=CCDC102A PE=2 SV=1
Q68D86	Coiled-coil domain-containing protein 102B OS=Homo sapiens OX=9606 GN=CCDC102B PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007174 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01576 all species →	Myosin_tail_1	Myosin tail	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002928 all species →	Domain	Myosin tail	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46292 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 102A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16759	CCDC102; coiled-coil domain-containing protein 102	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001633645.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

7.4Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	5.04	5.64
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.08	6.31
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.03	5.31
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.00	2.10
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.52	5.27
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	1.30	2.20
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.68	6.67
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.08	4.16
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.50	2.56
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.13	1.88
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.54	1.87
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	5.53	7.35
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.93	7.20
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.14	6.42
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.49	3.02
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.69	2.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.64
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.94
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.54
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.31
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.44
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.49
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.31
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.82
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.97
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.10
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.03
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.87
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.27
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.85
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.45
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.20
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.69
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.67
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.38
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.16
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.78
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.31
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.56
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.93
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.88
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.53
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.87
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.44
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.33
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.35
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.64
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.60
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.20
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.78
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.81
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.42
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.02
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.46
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.06
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.