Gene detail

Detailed information of XP_001633995.2 in Nematostella vectensis

Genomic Location: NC_064037.1:9869455...9880041
NR annotation: XP_001633995.2, splicing factor ESS-2 homolog [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001633945.3

CAGCTCAGCATAAGGCCAAAGATACGTAAATATGGCCGACAACAAGTGACGCATTTTATCCAAATTACCCTCTCCAAATCATCCCATCTTTAGAAATCACCTGTAAGCGACTCCAAGACACTTTCAAAGATATCGCTTCTGTATGATACAATCAATGAAGTTATGGCTTTGGTAAAACGCGACGATAATTTGGCCGTGGCAGTTCCAGAGTCGGCTAAAAACGTATCGAAAAAGAATGTGAAGGTTTTGGATGAAGATACCTATGTCCAGTCTGTAGATAAAATAATCCAAAGAGATTTTTTCCCTGAGCTTTCCAAGCTGAGAGCACAACATGAGTACCTTGACGCTGTGGAACACAATGATACAGAGCGGCTCCGTGAGATATCATCACGGTACCAGTCCAACCAAACTCCACATCTTGCAACTCCAGCCACTTTTGACACCCCTAGCACCATCCAAGGAACCCCTTTACGACAAGGCGAGGTGTCATCTATGCACAGAGAGCAACCGAACCAGTCACAAGAGGGTGATAAACGAACCAAAGACCCTTCAAACCTTCCACTGGACAAATTCTTAGCCAAGCACACAAGTGAGGATAATGCTTCATTTGAACAAATCATGGAGACGGCCAGGGAAAAACACCGAGAAAAATATGAGTGGCTTTATAAGAAAGAGGAGGAGCATTCAGAAATCCAGCAAGCAAGTTTAGCGCTTCCCTCAGGAAAGGAGGGAGAGCAACTTATGATTGAACAGCGACCAGCAATGGTCGAGACATGgacctacaaaaataaaaatgcacTTATGTATGTCCCTGAGGGTACAGAACACTCAGTGATTGAACAAATTGAAAAGAAGGCTAAGGGAACACAAGAGGTTATGCATGAAAATACTAGGTTTAGTAGAAACCCATTTCCTGACGCTAGTTGTAGTGGGATGCTGGCTGATGCGTCAGCAGCAAAGCTGGCTCAGCAGCAAGGCAAGATTGGAGTTGATGGGCAGGTGATTGCCCCATCAGAGACTCCAAAAGTCAATGGGTTTGGGTTTATTGCCACTCCCTCGCCTGCACCAGGTGTTGATGCCTCTCCATTGATGACATGGGGTAGTATTGATGGCACCCCTTTCCGCCTTGATGGGAGTGACACGCCCAAGCCTAGCACCCCGGGTCCTGGCTTCAGGATGCCAGAGCCCAAGCCTAGGGAGAAGCTTGGGCACGCCTTGGCGGAGAGAGTTAGCAGACAGCATCGGGACAAGAAACGGGACGCAAGGGCAAGGGCTGCAGCGATGATAGGGAGTAGCCAAGGTCAACCAAGCTCTGTAAAGAGACTGAACAGCATGTCTCCTGCAGCTCAGCTGTTGGCGTCCAAAAGATTGGGAATAAGAATGGGCACAGACAAGGCATTACAAGCAAGCTATACCCCTTCTCCTTCGCACAGGGGTGAAGCCACACCCAAGAGCACCCCAGGCCATTCAACACCTAGGACCCCTAAGACACCTGGCATGTCAACACCTACTAGAACGTCATCGCTAACAGATAACCTGCTTATGCTACCAAAGCAGCTCTAGCTATTTTATTGGGGGAGCaagaagggggtgggggagtgggctggtgcatagccaggatttacagggggaggggttacacaggaaaatgtattttttatgtttggagggtgcaggatatttttttattcatgcCTCAATAAAAATTCAATATAAATTAACCACAATTTTCTTAATTTTCCTGCTCTCAAAATGCGACACGTGACAACAAAGGAATAATGAGGGCTTCCCTCTAGATCGAGCGATTTTGCTAAAATAACGAAACGGCGGATAAGGAACTATGTAATAATTATCAGGAGGAGGGGGGCTGTAAAATGAGCTTCAAATAATGACAAATTACGTAGGACCCCCCTACAACAGCATCAAGTTTAGCTCTGACCCCTTCCCCCGGTCCTGTTCCTTTAAAAATtacgacccccccccccccctcctacaTTCTACCTGTAGTCACTTGTTTCCTAATGCATTCTATTCGTCAGGAGGATAAACACCGCATAGCTTAGGCTAATAATTAAAGCTCTGTCTAATAATTAAAATAGATTGAGTAATATTTACCTAAAAAGGCCCATAGACCTGAGATTGTTATACGCAGCGGTTCGAGATACCTCCCCTTCATGCGTGACAAATCTTATCCTCTTGTCGTCTTGGTGTGGCCACTAGAATATGTATGCTTACGGGAGTCCACTTTCTGAGTTAAGCTCAGGCGAACATCAAGAGAAACAACGAGTTCATTTTGCCGATAAGTGTTTTTTTCGCTCGAGACTGTgcactttaattttttttgttgcaatAGCCTGCGGCTCTTAAGTTCCAAGTTTTTCTCGTGTACTCCCAACCTCCCGCATGCGTTTATCACACCATAAACAATAGAAATGTGTAATTTATTGCTTAAACCAATATCATATAAGTAAGAATAACTGACTGCGGAAGTGAAAGCACAAGTGAAAGCAGAAGTGAAGGCGGGAGTGAAAGCAGAAGTGAAAGCGCAAGTGGAAGCGGAAATTAATGGTTCACTGGGAGGAAGAAGAAATTGAGGAAATAGACTCATGAAATAAGAGTTCATTAATAGTTTTGTGGCGGGAAATTAAGATGGAATCCCACCTTGGGATGGTCGGTATCCCACCTTTGATGTATAGTAAGCCCACCTCTGTATCTTAGATCCAACCTAATAATAAATGTCTCTATAGATATAGacacatttattattattatttttaggggATTACAAATATTTAATATAATGTGAGCATGTCTGCTTTCAGAGTTTAGGACTGCAACAAAATTCCAGTTTAGAGGTGAAATACCTTTATTACAGTTTGTTAGTTTGAATATGTTGCAATATTTAacagtaagtacgca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DF8	Splicing factor ESS-2 homolog OS=Homo sapiens OX=9606 GN=ESS2 PE=1 SV=1
O70279	Splicing factor ESS-2 homolog OS=Mus musculus OX=10090 GN=Ess2 PE=1 SV=2
O44424	Splicing factor ESS-2 homolog OS=Drosophila melanogaster OX=7227 GN=Es2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007183 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09751 all species →	Es2	Nuclear protein Es2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019148 all species →	Family	Nuclear protein DGCR14/ESS-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12940 all species →	ES-2 PROTEIN - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13118	DGCR14; protein DGCR14	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001633995.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

10.0Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	4.05	5.21
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.57	4.35
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.56	5.05
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	5.08	5.64
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.70	4.60
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	5.05	9.97
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.10	4.68
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	5.24	5.50
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	6.47	8.10
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	3.99	6.72
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	5.60	6.06
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.28	4.98
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	3.29	5.51
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.98	5.95
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.43	5.18
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.12	6.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.21
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.28
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.65
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.35
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.33
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.03
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.05
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.32
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.30
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.64
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.00
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.60
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.60
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.63
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.87
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.97
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.17
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.68
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.62
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.50
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.47
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.76
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.10
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.46
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.85
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.72
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.24
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.06
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.86
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.87
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.98
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.86
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.51
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.36
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.95
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.18
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.10
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	6.35
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.