Gene detail

Detailed information of XP_001634069.3 in Nematostella vectensis

Genomic Location: NC_064036.1:2692667...2707231
NR annotation: XP_001634069.3, hepatoma-derived growth factor-related protein 2 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5513856

ATGACTTACCAGCCAGGCGATCTCATCTGGGCTAAGATGAGAGGTTACCCTCACTGGCCGGCAAGGATTGATCTCGCGGCCAAAGATGAAGTTATTCCCGCAAAAAAGTATCCAATATTCTTCTACGGGACACATGAAACGGCGGTGATGCTTCCCAAGGATCTTTTTCCTTATGAGAAACACAAGCACAAATTTGCTAAACCTTGCAAAAGGAAAGGATTTATGGAAGCCCTGGAAGAGATAGTTAAAAATCCAAAGATTAAGTATGGTATGCGAGGTATTCAGGTAGAGGAGGTTGATGAGGAAGACGAAGAAGAATCTGAGAATTCAGAAAGCGAGGAAGAGGAGGAGAAAGATGAGGAGAAAGAAGAGAAGCCAGCCACTGGGCAAAGAAAAAGAAAAACAAGTACCCAAAAACAAGCCCTAACTAGGAAGAAGTCGAAACAGTCTGACTCTGAAGACGAAGATGAGAAGAAATCAGAGTCAGACGAGCCTGTGGAGACCGAGTCAGAGGAAGAATCATCGGCAGAAGAAGAGGAGGATGAGTATAAACCAGAACCAAAGACAAAAAGAACTAAAGCATCAGACAAGAAAACAAACTCCTTCAAAAAGACAGCTGGTCGACCTGGAAGACGGAAGTCTGCTAAAGTCATCAGCAGTGACAGTGATGGTGATGATGACCATGATGGCAATGGGGAGCAAAGCAAGTCAGGCAGTGAAAGTGATGATGATGAAGAAGAAGAAGAAGAAAACGAAGAAAAAAAGCTTACTCAGAAAAAGAAAGGCAAAACACCAGAGCAAAAGAAAACCCCAGGTACTAAAAAAGCAGCATCAAAGCAAAGGCAGCCAACAGATGAGAAGCGGAAAGATGGACAAGAAAAAGTAGAAGAAGAAAAAGGTGAGGTTGAAGATGCACAGACAACTGAGGAAGAAGAAAAACAGAAAGAAGAAGCAGAACGAAAAAAACAAGAAAAACTGGAAAAATTAGCTAAAAAGAAAGAGGAACTGAAAGAGAGAAAAAGACAAGAGAAACTTGAACAAAAAGCCAAGAAGAAGGAGAAAGAACGACAAGAAAGGGAAAAAGAGAAAGAGAGGGAAAAGGAACGAATTCAACAAGAAAAGGAGAAACAGAAAGAAAGGCGAGAAAAGGAAAAGCAGAAGCACCAAGAAAAGAAGGAAAAGGAGAGACAGAGGGAGAAGGAAAAACTTGAGAAAGAAAAGCAAAAAGAGCTTGAGAGGAAAGAATTGCAAAGGCAAAAGGATAGGATGAAAAATCCTACGATGAATGACATCCTTGAAAAATGTGACATTGACCTTAAGGTCTCCCTGAGAGTAGAGGCACCGGACATCCAACAGTGCTTGTCAATTTTACACAAAATAAACGAGATGCACATCAGTCCTGATGTGATCAAGAAGTCACCAGCTATCGTACAGACCATCAAAAAGATTCGTAATTACAAGCAGAACACCAAAGTGCAAAAATGTGCAAGTGAACTTTATGTGAAACTAAAGGCTCTCTTCATTCCTCGTGGCTGTGATTCAGAAGACACCTCCTTATCAGCCAAAAAGTCAACTCATCCTTCTGTCACAACATCTGCTCCATCCCCTTCCTCGGCTGAACAGAAGTCTGAGGGGGTCTCACCAAGTGATAGCACCCCCCCTGCATCAGGCAACAAAGCAGCCGATAACAAAGAGAACCACACAGAGAATGGCACTTCTGCTTTAGATGATCAAATAGATGCATCACAGACAAACACTATACCACCTCTACACAGACCACACAACAGACCAAGTAATGATGCTCCAAAGCTGCCTCCCTTACCAAAGCTTGAAAGGTCTGAAGAGAGAGCCAAGGCTGTGAACAATGACAGAACCCACTGGGATAGCACAGGATCTAGACAGCCTCGCAGTGAACCAAGGGATGAAGCCCCTCGACTGCCTCCATTGCAAATACCAAGAGAACATGAAGACAGTTCAAAAGCAGGATTTGATAGCAAGACTAGAAAGGAAAGAGGTCCTAGGAAAAGCCGATTTGAACCATTAGATGATTACGGTGATAGCAGGGACCCAAACCAAGGAAGTAGAGAAAGGTCCGAGCTTAGGGAAGGACAGAGTAGCTATAGGCCATCACACAGGCTAGAAGAGAGAGAAGAAAACCCTGCTTTGTACAGCAATAGGTATGACAAGACAAATCACTACGAAGATAGGAAAACCAACAATGAGACATTGCCACCCCTGAAACAAGGTGGTTATGTCAAATATGATCCAAGTGATTTCCGGGAGCGATATGCGAAAAGGGAAATATTTGACTATCAGTCTCAAGCTTCTTCAGTACAGGAGCCTCCTCAAGATGTTGCTTTCTCTGCACCTGAGGATGCATATTCACCTACAGAGGATGCATTCCCCAGTCAGTATGAAGGTGACTTCTTGTCACAGGATGGTGGAGTGAGCTATGGAGGCCATCACAAAGAGACAATGGAAGGTTACCCTGGATACGTTGACAGGGAACCAATTGAAATGAAAAGCTCAGTTCCTATGGATACTGCTGTAACAGATGACCTCACTCCATGTGATATGGAAATTTCTAGTCCAATTTAA

Transcript

rna-XM_001634019.3

TCCCCAGGCTCACGCGTCTTCCCcggtcgccatcttggattctgcAACATTCAAACTAGACATGTTCTCGTATTGATTAAATTTTCAGAACATTGCAAACAGCTTGCCTCAGAAGATTGGCTTTGGGTTGTGGAAGGGGAAAATGACTTACCAGCCAGGCGATCTCATCTGGGCTAAGATGAGAGGTTACCCTCACTGGCCGGCAAGGATTGATCTCGCGGCCAAAGATGAAGTTATTCCCGCAAAAAAGTATCCAATATTCTTCTACGGGACACATGAAACGGCGGTGATGCTTCCCAAGGATCTTTTTCCTTATGAGAAACACAAGCACAAATTTGCTAAACCTTGCAAAAGGAAAGGATTTATGGAAGCCCTGGAAGAGATAGTTAAAAATCCAAAGATTAAGTATGGTATGCGAGGTATTCAGGTAGAGGAGGTTGATGAGGAAGACGAAGAAGAATCTGAGAATTCAGAAAgcgaggaagaggaggagaaaGATGAGGAGAAAGAAGAGAAGCCAGCCACTGggcaaagaaaaagaaaaacaagtacCCAAAAACAAGCCCTAACTAGGAAGAAGTCGAAACAGTCTGACTCTGAAGACGAAGATGAGAAGAAATCAGAGTCAGACGAGCCTGTGGAGACCGAGTCAGAGGAAGAATCATCGGCAGAAGAAGAGGAGGATGAGTATAAACCAGAACCAAAGACAAAAAGAACTAAAGCATCagacaagaaaacaaactCCTTCAAAAAGACAGCTGGTCGACCTGGAAGACGGAAGTCTGCTAAAGTCATCAGCAGTGacagtgatggtgatgatgaccaTGATGGCAATGGGGAGCAAAGCAAGTCAGGCAGtgaaagtgatgatgatgaagaagaagaagaagaaaacgaAGAAAAAAAGCTTACTCAGAAAAAGAAAGGCAAAACACCAGAGCAAAAGAAAACCCCAGGTACTAAAAAAGCAGCATCAAAGCAAAGGCAGCCAACAGATGAGAAGCGGAAAGATGGACAAGAAaaagtagaagaagaaaaaggtgaGGTTGAAGATGCACAGACAACtgaggaagaagaaaaacagaaagaaGAAGCAGAacgaaaaaaacaagaaaaactggAAAAATTAGCTAAAAAGAAAGAGGAACtgaaagagagaaaaagacAAGAGAAACTTGAACAAAAAGCCAAGAAGAAGGAGAAAGAACGACAAGAAAGggaaaaagagaaagagaggGAAAAGGAACGAATTCAACAAGAAAAggagaaacagaaagaaagGCGAGAAAAGGAAAAGCAGAAGCACcaagaaaagaaggaaaaggAGAGACAGAGGGAGAAGGAAAAACTTGAGAAAGAAAAGCAAAAAGAGCTTGAGAGGAAAGAATTGCAAAGGCAAAAGGATAGGATGAAAAATCCTACGATGAATGACATCCTTGAAAAATGTGACATTGACCTTAAGGTCTCCCTGAGAGTAGAGGCACCGGACATCCAACAGTGCTTGTCAATTTTACACAAAATAAACGAGATGCACATCAGTCCTGATGTGATCAAGAAGTCACCAGCTATCGTACAGACCATCAAAAAGATTCGTAATTACAAGCAGAACACCAAAGTGCAAAAATGTGCAAGTGAACTTTATGTGAAACTAAAGGCTCTCTTCATTCCTCGTGGCTGTGATTCAGAAGACACCTCCTTATCAGCCAAAAAGTCAACTCATCCTTCTGTCACAACATCTGCTCCATCCCCTTCCTCGGCTGAACAGAAGTCTGAGGGGGTCTCACCAAGTGATAGCACCCCCCCTGCATCAGGCAACAAAGCAGCCGATAACAAAGAGAACCACACAGAGAATGGCACTTCTGCTTTAGATGATCAAATAGATGCATCACAGACAAACACTATACCACCTCTACACAGACCACACAACAGACCAAGTAATGATGCTCCAAAGCTGCCTCCCTTACCAAAGCTTGAAAGGTCTGAAGAGAGAGCCAAGGCTGTGAACAATGACAGAACCCACTGGGATAGCACAGGATCTAGACAGCCTCGCAGTGAACCAAGGGATGAAGCCCCTCGACTGCCTCCATTGCAAATACCAAGAGAACATGAAGACAGTTCAAAAGCAGGATTTGATAGCAAGACTAGAAAGGAAAGAGGTCCTAGGAAAAGCCGATTTGAACCATTAGATGATTACGGTGATAGCAGGGACCCAAACCAAGGAAGTAGAGAAAGGTCCGAGCTTAGGGAAGGACAGAGTAGCTATAGGCCATCACACAGGCTAGAAGAGAGAGAAGAAAACCCTGCTTTGTACAGCAATAGGTATGACAAGACAAATCACTACGAAGATAGGAAAACCAACAATGAGACATTGCCACCCCTGAAACAAGGTGGTTATGTCAAATATGATCCAAGTGATTTCCGGGAGCGATATGCGAAAAGGGAAATATTTGACTATCAGTCTCAAGCTTCTTCAGTACAGGAGCCTCCTCAAGATGTTGCTTTCTCTGCACCTGAGGATGCATATTCACCTACAGAGGATGCATTCCCCAGTCAGTATGAAGGTGACTTCTTGTCACAGGATGGTGGAGTGAGCTATGGAGGCCATCACAAAGAGACAATGGAAGGTTACCCTGGATACGTTGACAGGGAACCAATTGAAATGAAAAGCTCAGTTCCTATGGATACTGCTGTAACAGATGACCTCACTCCATGTGATATGGAAATTTCTAGTCCAATTTAAAACTGTGGAGATTTGTATATAACCATTTGTATAAGTATGTAAGACATATAGAAAGGCTGAGGGACTTGTGTGTTGCTACAATTCTCATCAAACTGTTTTTAAGTATAGTGGACCCttatttgtaaacaaaaagaTGATTATACTTTATATTTACACTTGAAGTTCTTTTTCAGGGTAGAAAGCAAGAAAAGTAATGGGTGTATCTGAAAGAATGATGCTCCAAGAGTCATAAGTATGATGAGAACTTTATTAACACCCTAACCTAGAAGGATCATgccaaatactatcctttttccacTGATCACTGTGCATCCCCTCAACAATCCAGGGTATTTAGCCAGATGTCTTTCCTCAATTCCCACATGCACAATAGCTTAGACTTGACTTTTCATGCCTGAAAGCATAATAATTTCGAAATATAACCTTACATACGGTAGTACACTTTAAGGCctttttaaaatgttaaatGAATTCATTTCTTTGCTTTTGTGACCTCTCCAAGaaggttgattttttttttgagaacATGCTTCATGTAACATCAGTCATCGTGACATACATCTTACTTGAATGTACATACACAAGTTTTTATGTAATTTATCTTAATAATTTAGGTAAGATAGGCTGATTCTTTCAAAGGAAACtctttttaaagtaaaaaatgGAAAGCACTTTTTTGAGCTTTGACGAAGTATCTAATACCTGTAATAAAGTGCAAAGATATGTTGGTAAAACAgctgtttttttatcaatagaTAAAGCATCTGATGCATTTTGAATATTAGTGACGCTTCTCTAGTGCAAATATTCCACTTCAATTGATGGAGATTATAGAAATAAAATTCTTGGACTCTTTTAAAA

Protein

Uniprot

Uniprot term	Description
Q9Y3E1	Hepatoma-derived growth factor-related protein 3 OS=Homo sapiens OX=9606 GN=HDGFL3 PE=1 SV=1
Q9JMG7	Hepatoma-derived growth factor-related protein 3 OS=Mus musculus OX=10090 GN=Hdgfl3 PE=1 SV=2
Q923W4	Hepatoma-derived growth factor-related protein 3 OS=Rattus norvegicus OX=10116 GN=Hdgfl3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855	PWWP	PWWP domain	Domain	Interproscan
PF11467	LEDGF	Lens epithelium-derived growth factor (LEDGF)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313	Domain	PWWP domain	Interproscan
IPR021567	Domain	Lens epithelium-derived growth factor, integrase-binding domain	Interproscan
IPR035441	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR036218	Homologous_superfamily	HIV integrase-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12550	HEPATOMA-DERIVED GROWTH FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0061628	Molecular Function	H3K27me3 modified histone binding	Interproscan
GO:0062072	Molecular Function	H3K9me3 modified histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25065	HDGFL2; hepatoma-derived growth factor-related protein 2	-	DNA repair and recombination proteins	ko03400	deepkoala