Gene detail

Detailed information of XP_001634629.2 in Nematostella vectensis

Genomic Location: NC_064034.1:17668892...17672026
NR annotation: XP_001634629.2, 39S ribosomal protein L46, mitochondrial [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001634579.3

TTTTGACCTTGGTAGCCTGGTATATTTGGCGCGGCTACCTTgtatacaagatggcggccgacATGAGCTTTCGAGTAGCGAAACATTTTTCTACTTGCCTTGCTTATCTAAGTAGAGGAGTGCGCCAACAAAGAAATCTAGGAAAAGCTCTTATTTCTACACAAGCAAGCTACAGCAGGAGATTCAACGAGACATACAGATTAGGTGTCCTGCATAAGAGGCTGTACTCTACAAAACCCAACCCCCAGATCCAAGAGCTGCCTCAGCCAGCTATATACACCGCCATATGCGTAGAGAGACTACCGGTGGTAACTGCAGACAAGTCGGAACTGGAGAAGCGCTTTGAGAAACTCCAAGATCAGTTGGAGATAGAGCACAGTGTGTTATGCGATGATGAGCTTACAGTCAAGAAATTGAGAGACAGGAAAAAGAAACTAACAGAGCGCGATGAAGACGAAGCTATAGAGATTGCACAGATTGAAGCGAACAGAAAGGAATTCCAAGAAGAAGAGGAGGAAGAGCTACTGCAGTTTCAGCCTGCCAGTCGCGAAACAGATGACGAAGGGGATGTACGAAGTATGAACCGCAAGCTACAGCACAACCTTGTGCTTCTTCTCAAAAGAAATGATACATCCTGGGAAATGCCAATAGGGCAAATACAAGATAAGGAGTCGCTGAGACagGCCGCTGAGAGAAGCTTAAAAGAGATGTGTGGTGATGGAATGGACACCAGATTCTTGTCTAATGCTCCAGCTGCTGTTCTCAAAATGTCAAAGCTTCagccaaaaaacaaaaacaaggtatttttttacaaagtacACTTCCTTGGGGGATCGCTAAATCTAGGAGAGACCTACACGGACTTTGCATGGCTAACAAGGGACGAAATACAGGAGTACCTTGTCCCAGAATACTACAGACTTGTCAGGAGATTTCTCCATTGAGTATAGAGATTTCTCCATTGAGCAAATAAGGGCTTGGAATTTTAAGGACTGACAAGTTAATGCTAAAATCTGAATTAGCTATTAAAGTTTTAGCGGAATTGTATTCACAGACAGTTGCATGTATGCCAATAGccaatcttttattttaaagaaagtGCTTGCATTAGAAAGAAGCAACACTTTTGAGTGTggtataaaaataaatcatggGGAAATAACTTTATTTTAGGTTTTCCAAGACGATTACATTACATATATAAATTCTATACAGTAGAAAACTAATTCATTATCTCTTATAGTAATAATAAGCCACACatgctttttttcatttttactgcCATTCCCAATCTCCAATACTGTTtgacatcatttttttttgctaaaccCAATGCAGGCTTACATGAACAATAGTGTGCCACAGTTTATAAAACTAtatcacaaatataattgaaaaCGAAATGGAAATAACACGATaatgtattatatatattttttatcatatatACAATGTAATACTAGGCTTAAAATAGGGAAACTTTAtccctatttttttctataatgaTGAACTGCTCTGACTTGAGTCTATTTTTGCCTTTCTTTGGCATTGTACACGAGGCTAGTTATTTACATTTTCATCAGATCTAGAAGAAGGAAAGCCTTGTAAGCTTTATCCAGTCTTGGATTCCTAGAGATCAAGCCATAGCCAGCACGGGAAcagtaaaaagaaaatatctgaGACTTGTTCCCCTGAAAAAAAGTTTCTAGCTCAACCTTGGAGAGGACACTAACAAATAGGGTAATCTTTAACTTTCCTAGTTGGTTCTCTAAAGTACCATGATGGATAGGAAAACATATTTAACATATTTCTCAAAGGTGCTTTCCGGCAAGAGATTGTACCCACTATTTCATCAGGCAGAAGGCCAACATTGTTCATGTCATGAGGATGTTTACTTGCCATTTTACACCCCTTTTTTGTTTCCCAAGAATCAGTGTACTCATCTTTCCCCTCCCTTGGGCTTGTCTCTAAAAGCAGAGACCCAGGATAAAGTTTAGATTgtccacgggctataggataatctgACTACGAAATAATGTCTAATGTCgtgttagtgttgaataaagcacATATTTCTACCTCAA

Protein

Uniprot

Uniprot term	Description
Q9H2W6	Large ribosomal subunit protein mL46 OS=Homo sapiens OX=9606 GN=MRPL46 PE=1 SV=1
Q5RBU2	Large ribosomal subunit protein mL46 OS=Pongo abelii OX=9601 GN=MRPL46 PE=2 SV=1
Q5RK00	Large ribosomal subunit protein mL46 OS=Rattus norvegicus OX=10116 GN=Mrpl46 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00293	NUDIX	NUDIX domain	Domain	Interproscan
PF11788	MRP-L46	39S mitochondrial ribosomal protein L46	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000086	Domain	NUDIX hydrolase domain	Interproscan
IPR040008	Family	Large ribosomal subunit protein mL46	Interproscan
IPR015797	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR021757	Domain	Large ribosomal subunit protein mL46, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13124	39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005762	Cellular Component	mitochondrial large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17427	MRPL46; large subunit ribosomal protein L46	-	Ribosome	ko03011	deepkoala