Gene detail

Detailed information of XP_001634804.2 in Nematostella vectensis

Genomic Location: NC_064039.1:2553416...2555486
NR annotation: XP_001634804.2, uncharacterized protein LOC5514570 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001634754.3

GTTACAATTCTCTTTAATTGCACTGAAAACTTATCGGGCTGAATATTCAAGCAATATGGCGGAAAGAGCGTAGTGTAGGCAAGCACGGCGTTAATGGTGAGTAGGGCAGAATACGATGGCCGAGGCGGGTAGAACATCACAGAGGCGCTTCACTTCGCCGAATGGAAGCACTAGATCGGGCCGCAGTCGAATGGGAGATGATAAGGAAGAACTCATAGAGCAGTTGCGGCGCTTTAGCAGCGTTTCGCAGgaggattttgaaaaaatgCGACTAGCGGAAAAGGAAGACGATTTCTTCGCCATACGCAAGGCAACGGACATTACGGACCCCGATACAAAGAGCGACCCGTGTCCTCCACTTCCAATTAAATTGATCCACGGAACGTTCCGGCATATCCTTGGAGTTCGCGAAGCTTGTTCTAAACAAGGCACGTTTCTACAGAGAACAATTGAACTCAAGCGCAAGCCTGGGGAATCTCTAGGGTTTTATATTCGGCAGGGAGATGGTTGGGAAAGAGAAGATGGAATCTTTGTATCAAGAGTCGTGCTCGGGACTGATGTAGATGTTTTCGAATTGCTTCGCGTTGGGGATGAAATAGTGAAAGTGAATAAAGTTGATGTAAGAACGATGGGGATAGAGGATGTAAGCGCTCTCATGCAAATGACGCGTCGTCTCATACTTACTCTCAAGGTTTTAACTCCTATTTCGTCAATGAATCGGAAGCTAGCTATGAAAGATGGAACAAACGCAAGCACTAAATCGTCCACCGGTACTACGAAAACGTCTAGGTCCGCTTCCCTTCCGGCTAGTGCACATATGATGGTGCGTGATCGGGGAGGTCGAATGGTTCCTGATCGCAGATATAGCACAGCATCTCGGCTAAGCCACGAAGCAAACTACAAAGTAGCAAATTTGGTAATCGGACGAAACAAGGACGCTCTACCTAGCGCTGGGAATGCAACTGCGGCGTCGCCTGTTACTACACCTCCGCCAAGGCAAACATCAAGGCGCAGCACTAAATCCCCCGTGCACGGGAAGCGAACGCTCTCTCCGATCAGGGAATCAACTACGGACTTGGGGCATTCAGACGTGGACGAAAGAGCTCGTTCTAGCAGGGCTGCTAGCGTTGTAAGCTGGTCAGATCAATTTTATGGCTACGGCGGTTCTACCAGCCCTGTAAAACACAAACCCAACGATCGAAGGAAATCGGAAGCCTCCGGAATACGACCTAGATGAAACTCGTGTAAACTAGTAAATTTTTTATCGCTCTTGAAGTGATAATTGGAAGAATATATTGGAATTTGAAATTTTGGGAATTGTGCCGTGGGCCGTGTGGATGGAAGTCGGTAAGATCACTGGAATTAGGTAAAGCAAGCTTGGTGGAAATCTTTCTGTTTTATTTGGAGTCGGGTTCTGTGGAATTTGCTAGCTAAAGAATTGTGCAGGATCCTGCAAGCTGCCCCGGAACCCATACTACCAGCTGTATGCCGCTATGCAAAGCGTCTTCCAAATTCCCCATTTGTAAACACGAATGAAATAACATCGCTCGGACAGCTTTCACATGGATCTAGCAGCTTTTAAATCTTCTCGCTCCGAAGTCTGGCCCACTCTGGAGAGCGAAGACCATGTGATCAGAAATTTGTTTACGCCAGCAATCTTTATGGCGTTGATTCTGTGGTGTTCTGACACtgtttttcaattttaatCGCTGATTTCCAGTTCCTACTGACTTTGCAAATAGTACTGGTGTTTTTTCCCCAGGCTTTTTATGATGTTTGCAAGTCTGCTGGTATTTGAAGAAATCAAGCCCACTGTGGAGTTCGTTatgtaaaacaattttaaCTTTGCTAGTACAAGTTAAATACTGTCTAGCACTGTTATTTAAGCTTTAACCGAAAAACGAACCAAGCAGAGACCATAAAATTATTAGAATGTCCAACCGTAAATTCACGGCTTACATTTTCATACTGACCACAACTCAAGCTGTTAATACCTTTAAATTGTAAATGCATTCTTGTAGCTGGCAAAATTTTGATCGAATCAGTTGATAAAGGAAATCAGCCTTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V9S7	Rho GTPase-activating protein 100F OS=Drosophila melanogaster OX=7227 GN=RhoGAP100F PE=1 SV=2
Q86NH1	Rho GTPase-activating protein syd-1 OS=Caenorhabditis elegans OX=6239 GN=syd-1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007812 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR052118 all species →	Family	Rho GTPase-activating regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46150 all species →	RHO GTPASE-ACTIVATING PROTEIN 100F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0046578 all species →	Biological Process	regulation of Ras protein signal transduction	Interproscan
GO:0097060 all species →	Cellular Component	synaptic membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001634804.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001634804.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

20.0Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	6.35	9.36
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.75	9.64
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.40	10.38
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.79	8.66
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.47	8.93
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	6.88	7.15
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	8.20	9.46
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.33	8.59
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	5.09	6.49
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	6.35	7.99
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.59	8.60
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	10.84	19.97
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	6.14	7.82
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	7.73	10.42
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	6.47	7.70
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	8.33	10.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.36
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.89
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.81
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.64
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.19
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.42
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.38
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.97
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.86
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.66
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.39
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.32
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.93
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.29
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.18
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.15
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.99
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.49
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.46
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.76
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.39
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.59
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.92
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.49
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.49
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.51
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.27
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.99
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.47
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.58
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.60
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.69
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.47
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	19.97
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.72
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.82
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.82
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.32
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.29
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.42
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.92
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.85
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.70
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.47
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.25
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	10.63
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	7.58
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	6.77

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.