Gene detail

Detailed information of XP_001634963.3 in Nematostella vectensis

Genomic Location: NC_064035.1:3880158...3884745
NR annotation: XP_001634963.3, sodium-dependent phosphate transport protein 2B [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001634913.3

GGTCAGATTAAAGTCAACAAGGAAAACTGGTTATAACCGATCAAGCTAGTCATGAGCCTTAATTTCCACGATGGCTGCTCGTCGCGGCACATACGCACTCGAAGGTGACCACAGACTTTCTAACGACAACTCCGCTCTTAGTGAGCTCGCCCTGGAAAGATGTGGCTCTGTACAGAACCAAGACAATCCAGGAGAGATAAAGGTGGATGTTGTTCCAGTGGAAAGGGAAGAGTTTGATCCATGGGCCTTACCAGCATTCAAAAGCGCTGGTCCAGACTGGTCCGagTTGGACACCAAAGGCAAGCTCAAGCGCACTGCTTGGGGTTTCACTAAGGTCATTTTACTGCTCGGGCTGCTCTATATGTTCATCTGTTCGCTCAGTTTCTTGAGCAGTGCCTTTCGGCTTCTTGGCGGAAGAGCTGCTGGCGAGGCATTTGCTTCGAACTCGATCATCAACAACCCCGTGGCAGGGCTTATGATCGGAGTTCTCGCCACAGTCTTGGTGCAAAGCTCGTCAACTTCAACATCCATTGTCGTATCGATGGTTGCTGCTTCAAtcaTTGACGTTGGGCCAGCTATCCCTATCATAATGGGGGCGAACATCGGTACTTccgtcaccaacaccatcgtGTCCTTGGCCCAGGCTTCCGAGAGAAATGAGTTCAGACGAGCATTTGCCGGCGCGACCGTCCACGATATCTTCAACTGGTTAACAGTACTTGTGTTCCTTCCGCTCGAAGTGGCATCGGGCTACTTGTTTCATTTGACTGACGCTATCGTGAAGAGCTTTCACATCAAGACCGATACCGGGGCAAACGTGGAACTCCTCTCCAAAGTGACAAATCCGTTTACAAAACTGATCATCCAAATCGATAAGAAGGTGATCACCGCAATCGCACTTAAAGAGGAAGGCACTGAACTGAAGTCTCTCATCAAATTTTACTGCGACAAGGAGAAAGTTTTTGCCACGGCGAATGTGACTCGACTTGTGAACGAGACTGTGAACGGAACCACAATAGAAGTAAACAGGACTATAAGTGAGATGGTCAGTAAAGAGATCAAGATGCCCTGCAAGTTCCTTTTTCACGACACGGGGATGTCCGACACAAATGTAGGCGTGATTCTCCTCATCATCGCTCTCTTCATCCTGTGTGTCTGCTTGGTCTTGATAGTCAAGCTCCTTCATTCCATGCTGAAGGGCCAGATCGCTGCGGCTATCAAGCGTACAGTGAACTCAAATTTTCCAAAGCCGTTCCACCATTTCACCGGGTACTTCGCTATCTTGATGGGTGCAGGCATGACTATCCTGGTGCAGTCCAGCTCCATCTTCACGTCTGCTCTTACCCCACTGATAGGTGTAGGTGTGGTGGCCATCGAGCGTGCCTATCCACTGACCCTTGGATCAAACATCGGGACGACAGCTACTGGAATTCTCGCTGCCCTGGCCAGTGACCAGGGTAAGCTCGAGAAGGCCATCCAGATTGCCTTGTGTCATTTGTTCTTCAACATCTCCGGGATCTTGTTGTGGTACCCGATCCCGTTCATGCGTAAAGTACCCATCAAGGTAGCAAAATTTTTGGGTAACACGACTGCCCGGTACCGGTGGTTTGCTGTGGCCTACCTAATCCTCATGTTCTTCCTTCTACCCGCTGCTGTCTTTGGCCTCTCCCTCGCCGGGTGGCAGGTCCTTCTAGGAGTGGCAGCACCATTCATTCTCTTAATCCTGTTCATTGCTGTTGTGAACGTGCTGCAGAAGTTTGCACCGAACCGCCTCCCAGAGGTCATGCGCACATGGGAGTGGGCTCCTAAGTGGACGCGCTCACTGGAGCCACACGACAAGGTGATCCAGAAGGTGTACAAGCTAGGGAAAAATCGGTTCAGCAGGAAAGGCAAAAGGGGGGGAAACTAGGCAACAGCAGGGTTTGTCTCATATCCTCAAGAAACCCCTTTACCTAGTCTGCATAGCAAGCGCAAAGGGCTGGAAAAGGAGAAAAGATCATGCGTGCTTGGGGAGGGTAAAGAAAGAGCTACTCCCTCTTTGCTTTGCGTTCACCACTTCCAGTACAGCAATCTTACACGCGCACGGggtgacctttgggagcgcccgAAAAGTAAGCTGGATCATCGAGCATGGCCCACTCGTTTCTGTTGCCCTTCGGCATTGCTACGCAGGTTACCCCTTTTCATACTCTAGGAATCTTTTTTCACAGAACCCATTTTTtccaagaattttttttttgattgtATATACCACGTCTTGTAACCCTTCTTTGATTGTAATCTTAGTTCTGAGAaacgtttaaaaacaaaatggagaaAATTGTGTTTTTAGATTGTTTAAGGACAGTTTATAAGTTCCTTTTAGGAACTGAAACCTTTTTGTCTAAGTTGCTGGTAATGGAGTGCAAAGAGTTTTTAATGATGGGAAGCATTGATTCGATTATCATCTAGAAATTTATAGTGTATTCcagttatttttgttttaattttgattAAACTTGATCATAATTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27960	Sodium-dependent phosphate transport protein 2B OS=Bos taurus OX=9913 GN=SLC34A2 PE=1 SV=1
O95436	Sodium-dependent phosphate transport protein 2B OS=Homo sapiens OX=9606 GN=SLC34A2 PE=1 SV=3
Q5REV9	Sodium-dependent phosphate transport protein 2B OS=Pongo abelii OX=9601 GN=SLC34A2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02690 all species →	Na_Pi_cotrans	Na+/Pi-cotransporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003841 all species →	Family	Sodium-dependent phosphate transport protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10010 all species →	SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005436 all species →	Molecular Function	sodium:phosphate symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0044341 all species →	Biological Process	sodium-dependent phosphate transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14683	SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001634963.3 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

46TPM > 0

16Conditions

61.5Max TPM

30.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	42.99	49.69
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	25.49	33.67
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	10.46	12.22
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	17.64	19.55
whole 6 week old aboral regenerate · regenerate uncut	3	3	21.25	25.59
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	23.26	31.59
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	36.07	39.20
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	44.03	55.30
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	30.28	32.19
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	31.90	40.33
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	27.91	29.73
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	46.54	61.49
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	47.17	61.33
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	46.66	51.05
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	22.21	23.78
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	9.42	28.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	49.69
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	42.48
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	36.79
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	33.67
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	21.70
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	21.10
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.22
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.82
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.33
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.55
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.30
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	15.07
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	25.59
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	21.35
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.80
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	31.59
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	22.18
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.01
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	39.20
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	38.04
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	30.98
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	55.30
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	42.47
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	34.32
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	32.19
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	29.64
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	29.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	40.33
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	31.97
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	23.41
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	29.73
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	27.08
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	26.92
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	61.49
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	42.60
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	35.51
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	61.33
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	44.19
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	36.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	51.05
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	46.37
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	42.57
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	23.78
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	21.82
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	21.03
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	28.25
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.