Gene detail

Detailed information of XP_001635488.2 in Nematostella vectensis

Genomic Location: NC_064041.1:11653678...11663314
NR annotation: XP_001635488.2, uncharacterized protein LOC5515358 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5515358

ATGGCAAATGGATCAGGGAATTATTCGTTTTTTAATCACAAACTTCGAATGCCTACCAGAACAAGTCCAAGAAATAATAAGCTTTTGGAGCGAAGGACGTCATCGGAGAACACTCTCCACCGACTGGAGAGCCTTTCGATTTTGTCGCCAGCGTCTGCAGCTGTCGAAGATGTGGTCCCTTTTCGTGGGGATGTGTTTGCCGCGGGGCTAGTGCCCCATCCGCCAGATTCACCGAAATCTAGCGACGAAAACTCCAAGCGAACGAGCTCAGCTTTGAGATTTCGAGGTAAAAAACGAACAAGAAACGAATCACCGAGAACATCGGGCTCTGAAGATGAAAAACAGATTCGTAAGTTCGCGTTTACGTCTAAAGTTTCGCCGCTAACGTCTCCTAGACGATCGAGTACAGGGAGTATAGGTTCGCTAGAAGGACTCGAATGCGCTGCAGATTTAATTCGAAGGAAGAATTTGATTAGTTTGCAGCCGTTAAAAGGAATTAAATCTGATAAAGATTTGGTCTCTAACTTTAAGTCTTATCAGCAATCGGCAAGAAGTTCATCTCCCATAAATGTAGCTACAAATTCAAAACAATTGACCACTAGCACGCCAATCAAAGTTATGGAAAAGAATGAAAATGGGAAAGAAGAAATCAATGATCCTGGACATGGAAATAAATTGGACAACTCTGATTTCGCTCAACAAGCTAATAAATCTTTAATTGATAAAAATGTACGGGCTATTCCAGAATTTGCAGATGTGACCTCATCTTTGTCCTCAGAAGATAGTTTTACTAATGTTAGTGGCAACGATGATGATGACGATGATAATACCACTCTTTCGTCATCTAGCACTGATGAAGACCTTAAACAAATCAGTGAAAACATTGCAAAAGAGATATCTACCAAGAGATATCCTGATGCCACGTTACCCAGTCTGCCCAGAAATAGCACACTAGATATCTCTGGCAAATACGAAAGCATTGGTCCAGGGACATATGAAAAGTGTGCATCTCCAATGTACCAAAATGCTGACAACTATGAGAATACTAAACCACAAATTAATTCACCAAAATATTCAAATGTCAATGGAACAGTTTCATCTACTGGTGACTCATCATACGTCCATGACTCAACATTTGATGATTCAAGATTGTACGAGACACTTTCTGGTTACGAAAATCAAAAAGCACTAGCACAAGTTTGGTCGACTTCTACAGGAGACCTAAATCATGGGAATACGCAAACACAGAATGCAACAGATGCCAGGTTTGTCTCGGAAACTAACTTGTCGGCAGAAACAGGGAGTGGTTTCTCAAGCGTATCGAGGAATTCTCTACTACCGAGGGTGCCTGCAAAGGTGGCACGTATGCGCAATAAAAACTTTCTTCGTGAAGAAATGGAAAAGTATTTTCCTGATCATAAAGTTGGTGTTTTTGTGGCAACCTGGAATATGCATGAGGAAAAGGAGGTACCTGGTTTTCTTGATGACTTTCTACTTCCTGAAAATGTGGACTTTCTTCAAGATATCTATGTCATTGGCCTTCAAGAGAGCACCTCCTCTAGGAGTGAATGGGAGATCCGTCTCCAGGAGACGCTGGGCCCAAGTCACGTCCTTATGCATAGTTGCAGTTTTGGAGTTCTGCATCTGGCAATTTTTGTCCGTCGTGAGCTTGTCTGGTTCTGTTCAGCTGTGACACAAGAGAGTATTGCAACGAGGCCTGGCCACATGATCAAAACAAAGGGAGGCCTGGCAGTAGGCTTTAGTTTGTTTGGGACATCTTTCCTGTTCATCAACTCTCATTTAACCTCTGATGAGGGAAAAGCCAGGGACCGTGTCAATGACTACAACAAGATAAGAAAGTCCTTGAATTTACAAGGAGAAGAGAAACCTTGGGTTGACAACAGTCCTGATGTAACTGATCGATTTGACAGAGTGTTTTGGTTGGGAGACTTTAACTTTAGAGTTGACATGGAAAGAACAGAGGTGGATAAACTTATAGCAACATACCAAGAGCAAGAAAGCCCCGACTACAAAGAGCTTTTAAAGAAAGACCAGTTATCTAGGCTTATGAGCAAAGAGGAAGTGTTCATTGGTTTCTCAGAGCATCCCATCAGCTTTGCCCCAACTTACAAATTGGATATACAAACAGATGATTATGACACTTCATCCAAGATGAGGGTGCCTTCCTGGACTGATCGAGTACTATACAAATCACGCACTGAGAACACAGTCAATGTGGTTCGTTATGATGCTTGTACTTCAGTCAAGACCTCTGATCATAGGCCAGTGTTTGGTATTTACGAAGTTACACTCAAACCCTGCAAGGAAAGTGTCAGTATGACAGGGGGACAGTTTGTCAGGGATGTATACATTGAAGCTTGTCGCAGACGGTCGACCGCAACCAGCAAAACTCAGCATGACAGTTCCGTCTGCGTCATACTTTAG

Transcript

rna-XM_001635438.3

aaatataacaaaaaagaTGGCGGCGGTCTCGATAACGGAAGGGGTTTGCTTTCGGAAGTAGTTCGCCATTTTGAGTATTTATTTAGTCCTATATCTCTTAAAAGCTGCTCATTTTTCATCTTTATAAACTTGTCTGGTCCCTGAGCAGGCCTCATGGCAAATGGATCAGGGAATTATTCGTTTTTTAATCACAAACTTCGAATGCCTACCAGAACAAGTCCAAGAAATAATAAGCTTTTGGAGCGAAGGACGTCATCGGAGAACACTCTCCACCGACTGGAGAGCCTTTCGATTTTGTCGCCAGCGTCTGCAGCTGTCGAAGATGTGGTCCCTTTTCGTGGGGATGTGTTTGCCGCGGGGCTAGTGCCCCATCCGCCAGATTCACCGAAATCTAGCGACGAAAACTCCAAGCGAACGAGCTCAGCTTTGAGATTTCGAGGTAAAAAACGAACAAGAAACGAATCACCGAGAACATCGGGCTCTGAAGATGAAAAACAGATTCGTAAGTTCGCGTTTACGTCTAAAGTTTCGCCGCTAACGTCTCCTAGACGATCGAGTACAGGGAGTATAGGTTCGCTAGAAGGACTCGAATGCGCTGCAGATTTAATTCGAAGGAAGAATTTGATTAGTTTGCAGCCGTTAAAAGGAATTAAATCTGATAAAGATTTGGTCTCTAACTTTAAGTCTTATCAGCAATCGGCAAGAAGTTCATCTCCCATAAATGTAGctacaaattcaaaacaattgACCACTAGCACGCCAATCAAAGTTATGGAAAAGAATGAAAATGGGAAAGAAGAAATCAATGATCCTGGACATGGAAATAAATTGGACAACTCTGATTTCGCTCAACAAGCTAATAAATCTTTAATTGATAAAAATGTACGGGCTATTCCAGAATTTGCAGATGTGACCTCATCTTTGTCCTCAGAAGATAGTTTTACTAATGTTAGTGgcaacgatgatgatgacgatgataatacCACTCTTTCGTCATCTAGCACTGATGAAGACCTTAAACAAATCAGTGAAAACATTGCAAAAGAGATATCTACCAAGAGATATCCTGATGCCACGTTACCCAGTCTGCCCAGAAATAGCACACTAGATATCTCTGGCAAATACGAAAGCATTGGTCCAGGGACATATGAAAAGTGTGCATCTCCAATGTACCAAAATGCTGACAACTATGAGAATACTAAACCACAAATTAATTCaccaaaatattcaaatgtcAATGGAACAGTTTCATCTACTGGTGACTCATCATACGTCCATGACTCAACATTTGATGATTCAAGATTGTACGAGACACTTTCTGGTTACGAAAATCAAAAAGCACTAGCACAAGTTTGGTCGACTTCTACAGGAGACCTAAATCATGGGAATACGCAAACACAGAATGCAACAGATGCCAGGTTTGTCTCGGAAACTAACTTGTCGGCAGAAACAGGGAGTGGTTTCTCAAGCGTATCGAGGAATTCTCTACTACCGAGGGTGCCTGCAAAGGTGGCACGTATGCGCAATAAAAACTTTCTTCGTGAAGAAATGGAAAAGTATTTTCCTGATCATAAAGTTGGTGTTTTTGTGGCAACCTGGAATATGCATGAGGAAAAGGAGGTACCTGGTTTTCTTGATGACTTTCTACTTCCTGAAAATGTGGACTTTCTTCAAGATATCTATGTCATTGGCCTTCAAGAGAGCACCTCCTCTAGGAGTGAATGGGAGATCCGTCTCCAGGAGACGCTGGGCCCAAGTCACGTCCTTATGCATAGTTGCAGTTTTGGAGTTCTGCATCTGGCAATTTTTGTCCGTCGTGAGCTTGTCTGGTTCTGTTCAGCTGTGACACAAGAGAGTATTGCAACGAGGCCTGGCCACATGATCAAAACAAAGGGAGGCCTGGCAGTAGGCTTTAGTTTGTTTGGGACATCTTTCCTGTTCATCAACTCTCATTTAACCTCTGATGAGGGAAAAGCCAGGGACCGTGTCAATGACTACAACAAGATAAGAAAGTCCTTGAATTTACAAGGAGAAGAGAAACCTTGGGTTGACAACAGTCCTGATGTAACTGATCGATTTGACAGAGTGTTTTGGTTGGGAGACTTTAACTTTAGAGTTGACATGGAAAGAACAGAGGTGGATAAACTTATAGCAACATACCAAGAGCAAGAAAGCCCCGACTACAAAgagCTTTTAAAGAAAGACCAGTTATCTAGGCTTATGAGCAAAGAGGAAGTGTTCATTGGTTTCTCAGAGCATCCCATCAGCTTTGCCCCAACTTACAAATTGGATATACAAACAGATGATTATGACACTTCATCCAAGATGAGGGTGCCTTCCTGGACTGATCGAGTACTATACAAATCACGCACTGAGAACACAGTCAATGTGGTTCGTTATGATGCTTGTACTTCAGTCAAGACCTCTGATCATAGGCCAGTGTTTGGTATTTACGAAGTTACACTCAAACCCTGCAAGGAAAGTGTCAGTATGACAGGGGGACAGTTTGTCAGGGATGTATACATTGAAGCTTGTCGCAGACGGTCGACCGCAACCAGCAAAACTCAGCATGACAGTTCCGTCTGCGTCATACTTTAGCTAGCCAATGGGAAGATCTCACTGTCAGTCGCCTAGCAACCGCCCGTCACGTGACATGCCCATCTGGGGAGATCCAATCTGATAGTTGCACAGCAACCACAAATCAAATTTTTGTGTATCCAACATATTTGTCATGTTTCTTGGCAACGCGGAAAATTATCAAGAAACCACGGTAGAGAGCAAACCGAAGTgaacaataacaaacaacTTAGTGTATGCTTGGTTTCGAAAAAAATAAGGTATTCTTgtatgtttaaaaaatatgttttatttatctcACCAATAATGACAATTTGGTATTCAGtaatattgttttctcatGAAATCGTTGTCCATTTTAAATTATGTATAAAATATCTTTTAGCAAAAAAACGTGAAATAAATATATCATACTCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JII1	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Mus musculus OX=10090 GN=Inpp5e PE=1 SV=1
Q9WVR1	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Rattus norvegicus OX=10116 GN=Inpp5e PE=1 SV=3
A0FI79	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Pan troglodytes OX=9598 GN=INPP5E PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004581 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_001635488.2. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR053321 all species →	Family	Inositol Polyphosphate 5-Phosphatase Type IV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47039 all species →	INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20278	INPP5E; inositol polyphosphate 5-phosphatase INPP5E	EC:3.1.3.36	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001635488.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

8.2Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	2.47	3.72
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.27	4.21
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.15	3.89
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.22	7.88
whole 6 week old aboral regenerate · regenerate uncut	3	3	4.71	7.54
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	4.62	8.16
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.71	4.08
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.65	4.67
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.94	5.29
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	3.39	6.47
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	4.10	5.65
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.40	3.92
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	2.03	3.62
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.63	4.88
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.70	4.64
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.39	4.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.72
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.70
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.21
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.36
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.24
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.89
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.97
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.61
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.88
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.15
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.63
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.54
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.91
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.67
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.16
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.71
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.08
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.04
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.67
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.45
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.84
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.29
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.52
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.47
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.70
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.65
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.64
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.03
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.92
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.28
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.62
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.49
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.88
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.64
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.45
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.17
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.