Gene detail

Detailed information of XP_001636280.1 in Nematostella vectensis

Genomic Location: NC_064041.1:13687537...13694977
NR annotation: XP_001636280.1, uncharacterized protein LOC5516174 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001636230.3

CCGTCATACACTAGAGACAAAGCGGAAAACTAAAGCCTCCATTGCTGTTTTGCACGATCCGTTTTGCACTTGTAAAAATGCGGAAAATAGCGCATCCATGGTAATCATTATGGACTGAGATGCCTGCAAAATGATTAGGATGAAAGATAAAAGAGATGGTAGTTGATGAGCAAATATTCTTCCCTCACTGTAGCCCGTCCTCATGCTAAAAGCTTTAAAGCGAAGGTGCTTAAGAGCAAAGATAAAAATCAAAGGCAGCAACAACACAAGCAGTTCCGTTTGCCAAATAACTGAGGTACAACACCAACAGAGGGTCTTTGAGGGAATGAATGAGGTTGTTGTAGACTCCACTAAGAAAATATCTAGAAAACAACAGGGGAATATTACTTCTACGTGTCCAGAAAATACATCTGAAGTCAACTTAGCTAGTCACCACTCTGACTCCAAAATTCCAACAACCATAAATATATGTGATATCAGCACTCAAAACTCCATGCatccagaaaaaaaggtaacaGAGAGTGATGAGCCTGCTGCAGTGTTGTGCCAACAAGGGCAGAGAGAGATCCCCATAACAGACCAAAATGCCATGAAAGATATATCTGGTTGTGTAGCTGGACTCAAGATATCAACACCTCATCAAGTTGACAAGGTTGCTCTTGATTCCCTGAAAGACATTGACAAGCATATGGCTAATCAGAATGAAGAAGAATTACTTCAAAGGGAGGTTGAAGGTCTCCGACTAGATACCTGCCTTTCAGAAAATGCTGAGATCATGGAGAAATTGTACCTTATGTTGGACAGAGAACATCGTGTGATTAATAACTGGCGTCATCTTGCATATTACTTTAAGATCGATGCGAACATCTTAACATCATTTGAACTGTGTGCAGAGACAAGTCCCACTGTGGATTTGTTTGAAACCCTAAACGTCTCACATCCTGATCTGACTGTGAAACAACTAAAAGACGCTCTAAGAAGGATACACAGGAATGACATTATTTGCTTGCTTGaaAAATACTCTGAAAATTGGAATGTTTCTGATCTGTGTCATAAGGTTCCAGAATTCATTGAAATTTTCAAAGCCCGGCTAGACATCAGATCTAACTCAATTGGGGATTGGAAATCATTCGCTATGCAGCTTGGCTTAACAAAGAAACATGTGGATACATTTGGAGAACCCAAGACAAGTCCAACTGAGAATTTGTTCTTATATTTGAGTGGCATCAATGATACAACTAGTATCAGTCAGCTTAGGGACCACCTGAAAGATATGGAAAGGAATGACGTAGTGAGGCATCTAAATAATCTCAATGGTGCCCAATTAGTAAAAGATGTCATAACACCACAATCAGAGATACTACTGAAATTGTCCAGCCTCCTGGACAAGGAGTCGCGAGCTGTGAAGAACTGGAAGAATCTATGCCACAGGCTCAAGATCCCGAACTCAAAATATGAGAGCTTTGACGCCTCCAAAAAAAACGCCCACAGCCCAACCAAGCAGATGTTGCGCTGGCTGAAATGGAAGTATCCTGGAATAACGGTCGGGGAGCTAGCCGATGGGTTGCAGCATATCCGTCGTAATGACGTCCGGGGGGACCTTTTGAAAGCGGCAAAAGCAGTCCTAGAAAAACGCAGCCGACCGACAACCCCAACCGCAACTGAGACAGCCCCACTAGGAGCTTACAGTCACGGTTTAGGAAGACTTGACCCGAGAGAGCCGCACCAACTACCGGGTAACTGGGTGACAGGGCCTAAGACAAGACCCACCCGTGAAGAGAAGCTAAGGATGAAGGCCTCGGACATGCCGGTTGATGTGTACAAAAGAGTATGTCTTATGCTAGACGTTAAGCAACCTTTCTGGGATGACTATCGCATGCTTGGAGAGGCCATGGGTATTGATAAATGCGGGATAAGAATTCTAGAAGAGAAGCCTTCCAGCCAGACAGACGTTATTCTGTATCAATACTCGAAAGGCATGACGGTTAAGGAGCTTATGGAATTGCTACAAACTGAAAACTTAAAGAGGCGCGATGTAGTGGAGGAGATACTATGCTGGGTGGAGTCGGAGAATGTGTAGAGTGGTCACAGGATGATCCTCTATGGGTAGAGTTTTAagacagtggtacctctattaagcggccacccttgagaccgtgccaagtgatgtatacagtggtacctctattaaagcggc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR034249	Domain	MyD88, death domain	Interproscan
IPR017281	Family	Myeloid differentiation primary response protein MyD88	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079	MYD88	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0002755	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070976	Molecular Function	TIR domain binding	Interproscan