Gene detail

Detailed information of XP_001636368.2 in Nematostella vectensis

Genomic Location: NC_064041.1:12799226...12814239
NR annotation: XP_001636368.2, putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001636318.3

GGACCGAGCTCTAGtagttcaagatggcggacgaagaaggcgaaaaaagaaaagctaAGCGCCACACAAAAAAGAAAAACGCAAAAAGAAGTTCAACAGATGAACATACCGACGGCGAAGAAAGCAGGAGGAATACTCTGGAAGCATCCATTAAGGCTCAGGTTGCGGCAGAGCAGCGTGCACACCAGATTGTTGAAAAACTTGTTCTAGAAGAATTTGCTACCCCAGAATATTTCCTGGAGATTGGAAACTACATCACCCATAGACATTATTCAGATGTTGTGACTGAAAGATTCATTATTAAGATTTGTGGATATCCACTCTGTCCAAAATCATTAATCAATATTCCAAAACAGACATTCAAAATCTCCACAAGGACAAATAGGGTCTACGATATTACCGAAAGAAAGTGTTTTTGCAGCAACACCTGCTACAAAGCCTCAAAATTTTATGAATCACAACTTGACGAGTCACCTATATGGACAAGGAGTCGTGCAGGtttgAAAGAGTTCACCCTGTTATGTGGAAACAAAACTTCAATCAGTCCTGGAAATGTCATACTTGGAAGTGGATCTCTTGCAGCTGAAACCATGAACAGCCCTAAAGGTGAAGTAACCACAAATATTGGGTATGGTAAAGAAGCGACTGATGGAGATTGCGTGACTGATGATCACATGATCGGCGTGAAgcatgataatgatgacgctACAGCGCAGGTGTCAAATGCATTTGATAAGTTATCTTTGTCATCTGAAGTTGGCCCCAGGACAATGAGTAAGattgaaataaaggaaaaatcTGTTGGGCAAGATCAACAGTATATTGAAAAGATGTCAACTGAAGAAACTAGAAAGACTCGTTCTGTGAATTACAACGAAAATAGCGTGACATCTGTCGATCCATCATGTGTGACGTCAATGAATTCATTTGACAATAAATCGACTAGCGTCACGTCACACAGTGACCTCTTGACTACTTGCGTGACAATGCATGATGCGGGCATATCACGCGATGACCTCTCGTCTACTAGCGTGACATGGGGAGGAGCCATGCATACGGAAAGCACTACCTCTCAGGCATTCTTGGACTCGGTCAAGGAAATCTTCTTGCAGTGGTGGACCGAGAGGAGCATATCGTTCATGGCGACATCAAGCAGAACTTGCGAAGAGAAAGAAGAAAAGGGTTCTACCTTTGAAGAGAAAGCCTTGCACTTCATTACTCATGCCGAGAACAGTGATAGCGAGGAAGATGAGGACACAACTCtgccaaaaaaagagaactcCACAACAAGCGAAGTTCGCCCATGTGTGCTACCTCCAATTGATAGCAAGTCGCAGCAAGTGATAAGAAAGAGGATAGTACTGCAGACGCTGAATAGGGTGCTGCCAGAATTTCTTCATAGCCTCGGCGTCACTGTCAGTGACATATCTTCAGACCTTGCGCAACTCGTAAAGACATTTCGTTTGCTGAGCCAGAATACGATGCTAAAGACTCTGCAGTGGAACGTCGTGGCAGTTGTTCTCATTCTCATGCTCCGACATCGGAACAAGATAATCAAAGAGAGACTTGAGACAACACCCGATCCAAAGAGCGCTTTGCTTAAGGGACTGGGACTGGCGAATGAAGAATTCGATCCGTTTTTTCTCGCCTTGGAAAAGAAATTACTTGACAAGGGACATTCTTTGACTGATCACCAATCCACTTCTGACATACCACGTACTCAGACACACAAGGTCGAGCAGGAACTGGGCACTGCATTGCACGAGCGTCGTGAACATGGAAATGTTGGGACGTTTGTGGAATTCAGAATTGAAAATAGTGCTCGGACACAAAAAACTGAGGAAAAACCGGTAACTAGGCATAAAAAGGGAGAAGATGATTGGCCAATGGGCATTAATCATGGTAGCGCATGCGTggaaaaatacagtgaaatggaAGATTTGGATTAACAGGGATTTTACAGCCTAGTCTATGAAGCCACTCTCGGGGGCGTCGCGCGATACATGTCGCCTGCAAgtctcctagtttagccacccaGAGAGACATGGTAGCACGCGCAGAATCTTGTAGCCgcgacaaagaaatgtttctctACAAAATTTGTCGCGCACTACATGTTTTTTGcggtggctaaactaggaacaTTAAGGAGACGTGTCGCACGCTCCATGTCGCGCTCGACATGTCGCCtcgtttagccaggcctttagagtaaaaaaatatatatttgcgTAAAAGCGACATTTGCTACAGGTAGAACGAGTCCACACTTAGCTATGTTACCATGGCATTGTTGTCAAACCTTTCTTTACTGGTTGGAAGAATAATGTTGAACTGAACGTTACTTAGATATTACACTCCCATTTAAATAATATATTGTCCTTCTTAAGTAAATTGTACTACTTGTGGAAAATTGAATAATACTATTGTGTATAAACTACTGACTACATATTTGTACTGATGTGCTGAGAAACATTTTATAACATTTTCCa

Protein

Uniprot

Uniprot term	Description
Q5RA37	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Pongo abelii OX=9601 GN=RPAP2 PE=2 SV=1
Q8IXW5	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Homo sapiens OX=9606 GN=RPAP2 PE=1 SV=1
F6RRD7	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Bos taurus OX=9913 GN=RPAP2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04181	RPAP2_Rtr1	Rtr1/RPAP2 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007308	Domain	Rtr1/RPAP2 domain	Interproscan
IPR039693	Family	Rtr1/RPAP2	Interproscan
IPR038534	Homologous_superfamily	Rtr1/RPAP2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14732	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008420	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0043175	Molecular Function	RNA polymerase core enzyme binding	Interproscan
GO:0070940	Biological Process	obsolete dephosphorylation of RNA polymerase II C-terminal domain	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20827	RPAP2; RNA polymerase II-associated protein 2	EC:3.1.3.16	Transcription machinery	ko03021	deepkoala