Gene detail

Detailed information of XP_001637307.2 in Nematostella vectensis

Genomic Location: NC_064042.1:2989342...2993053
NR annotation: XP_001637307.2, uncharacterized protein LOC5517227 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001637257.3

CTTATGCGCGTAATCCTCGCACTAGACAACACATACCAGCGTCGCTCGGTGAAGGCACGGGGTTCGGCCTCGATGCCACAGGCTTGGGCGCCAGCGACTTGGGGGCTGTGGTGAACAATATTTGTAAAACCTTGGAGTGAGAGGTTGATAGAACAATGCTAACGGTATTGTAATACCCAAAAGTATCAACcgcaaaacaagaaaaacaacgaGAAATTCAGCGGAGAAGCCCGTTGTGTGCATATGCGCAATTTCCTTACCTAATTTTCTCCCTGAAACGCTCTTCATGATCTCCTTTGTGAATGAATTTATCGCCTGACTGTTCGACTGCGTGTATTCGTGCGAACTttgttatgattttgcgtGAACGGCAAGAGCGCGCGCTTACTTTCGTTATTCCACAGGGCCCCCAGCTTTGATACGATTTatatattcatttatttttatagaaaGGATTAACTTCGAGAATTTCAAGACTTTTATGATTTAAAGGCATAGCTTTGAATATGTTAAAATTGAACAGTTTTAATAGTTTTAATCGATTTAGAATATCGATCAAAAAATCGATTTGCATGCATCGCTCCGTGAGAGCCGTAAAAGCTCAtgtcaaaatttatttttaaaagaaaattagaGTAAAATACCATTTGGGAGCCTTGCCCTATTGTTTGCTTTTCCGTTGCAAAAAGCATCATTAAAATAGGATTTGGTACAGATTTTAGCACCAGTGTACTTTCCCGCCAAATTCGGTACTTACAGAAAGCATACTCCTCCGGAAATCGGTTCTTCGTATGCACTTCCGTTTTCCTCGACACAGGGCCGAGGTCGgtgattagccaatcagcgtcGAGCATTGCTTGGCGCTAAAATTCATTTGGCGGGGAATAACAACGACCTTTCATTCACAAAGAAAGTGTCTAGTTGTAGAGCGGAAAGGAGCTTTTCTCTCCATAGAACCCTCAAGTTTCCCCAGAAATGTCAGCAATGAAAGACATAACGAACCGAAGTCCTAGCACTCGGTGTCCAAGACGCTCAAACTCCTCTGATGATGatatatttgtggattttagCACACCGGTGTCTCGAAGTTTGCGCTCCACTCGAAGGCGAAACACGAGCCCCCCTGGGCTTGATCTTAGAGGGCAAAACTTTGCCTCAAATAGCGAACGAATTGTTGAAGAAGATGGTAGAACTTCGAGATTATCATTCACACCGGAGCTAATATCTATGCCATTGGTATTATTCACCCCTACGACGGCAAGCGAAGAAGGAAAACGATCCAGATTTTCTAGCTTTTCGCTCGAGTCGTGCAGACCAAGAAAAAAGCTCCGACTCGATGTCACTGAGACCTCGGAAAACACGCTCCAAGATACACTCCAGAATCTCTCAAAACAGCAGTTAGTCGAATTGATTAGCGGCTTTATATCTGAGAGACACCCTGAACTTTCTCAGGAATTCGAGAATATTCTGCCAGAACCTGACCTCAGAGAAATGGAGGAAAGGCTGCGAATCTTGAAGAGGAATATTTTCAAAGCTTTCCCGAGGAGAACTCGAAGCGTTTGTTCGTCAAGAGACGCCTTCAGCTTTCGACGTGTCAACTCTCAGATCCTAGCTTTCAAgAAAGAATGCATCGACCAGGGCAAAAGCCTTCTGTCATCAAAGTTATGGAAGGCTGTGGTTGAATATGTCTTCATGGCGTGCTCTTATGTAGATGATCTGCCTGTGTGGGAAAGCCCGGCTCATAACTGCAGTAAAAACAACAGCTTCAAGATGCTGGCCCTACAGTGTAAAACTGCCTTAACAAAAGGCGAATTCACTTTAGAGGAACTAAATGAATATCAGCAAAGgTTGGATGTTATATGTTCATCAAATGAGCACTTTTGCCCTTGCCTCAAGCAAGTCAAATCTTTGATAGCAAGCCATCAATTCTCATAAAATAATGGGGATAAGTTTCATTGGAATAAGATTCACCTAGAGAAATTCCCATGGAATGTTCAACATTCAAATATGGATTTTGAATTAATCTTCATTCATCTCTTTGTACCAATTTATGATTaggtacacatatttttctataacagttgtaaaaaaaatagaaatgactgtaatttattttgatatggaacaattaaaaatatttgtcaATAAGTTTGTATATATACCCTGAATTCTTATATATCAACAATGGTATGTGTGCTGTGAGGGTGTATTAGGGATTTGGATATTGCACtacagaaaatgaaaaaaaatgccatataataaacaacttaCTAACCTCAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009142 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08559 all species →	Cut8	Cut8, nuclear proteasome tether protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038422 all species →	Homologous_superfamily	Cut8/Sts1 superfamily	Interproscan
IPR013868 all species →	Family	Tethering factor for nuclear proteasome Cut8/Sts1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28032 all species →	FI02826P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031144 all species →	Biological Process	proteasome localization	Interproscan
GO:0031965 all species →	Cellular Component	nuclear membrane	Interproscan
GO:0070628 all species →	Molecular Function	proteasome binding	Interproscan
GO:0071630 all species →	Biological Process	nuclear protein quality control by the ubiquitin-proteasome system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001637307.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001637307.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

25TPM > 0

16Conditions

1.1Max TPM

0.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.27	0.81
whole 6 week old aboral regenerate · regenerate 144hpa	3	2	0.48	0.78
whole 6 week old aboral regenerate · regenerate 0hpa	3	2	0.20	0.31
whole 6 week old aboral regenerate · regenerate 2hpa	3	2	0.24	0.37
whole 6 week old aboral regenerate · regenerate uncut	3	2	0.36	0.58
whole 6 week old aboral regenerate · regenerate 4hpa	3	0	0.00	0.00
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	0.59	0.91
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	0.49	0.94
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.30	0.54
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.21	0.43
whole 6 week old aboral regenerate · regenerate 16hpa	3	1	0.10	0.31
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.66	1.14
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.72	1.10
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.27	0.82
whole 6 week old aboral regenerate · regenerate 8hpa	3	1	0.13	0.38
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.14	0.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.81
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.78
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.67
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.00
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.31
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.29
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.00
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.37
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.34
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.00
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.58
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.50
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.00
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.91
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.85
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.94
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.53
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.54
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.37
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.43
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.21
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.31
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.00
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.14
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.83
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.10
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.06
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.82
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.38
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.41
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.