Gene detail

Detailed information of XP_001637986.2 in Nematostella vectensis

Genomic Location: NC_064046.1:6130272...6132776
NR annotation: XP_001637986.2, Bardet-Biedl syndrome 10 protein homolog isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001637936.3

atggcggctgccGCACTTCAAACTTGCCAAAATTTTGAAcgcattttaaaaaaaagttttggcCCGAATGGACTTGACGTTATGCTAAGATCTTCTTCtgggaatattctcattacaAACAGCGGCTCCATGATTTTAGAGTCGTTAACTATGGCGAACCCGGCGGGAAGAATGATTGCAGAAGCGGCACGAAGTCTGTCCGGCAGAACCGGTTCTGGTGCAAGCTACTTCATTATAATTCTTGCTGAAATCTTCAGAGAAATAGCTAATATAACAGGgataacaaaagaaaaaacactCAAAGAACTGAGCGCTAAGACTCAGATCGAACTCTTCTCATTTTCACAAGCGTTCAACAAGATAGAATCTGAACGTTTTGACGATTTATTTTTGCGTGCCTTTGATAACCTTGAAGTTCGTGTAGATTTGAGTGAAGACAATTGTGAACTAGTAcgaaaaaaactaaaagcGGTCATTAACACATGCCTTAATGGAAAATTTCCGAAACAACAAAGGGATAACTTAGCTACGCTGTTGGCTGATTTTTTGCATCTCTCTTGCAGCGCTCACAGTCAATTGTATCAATTTGTCTTGGATTCTATAGATGCCTTCTCTGAAATTTGCCTTGAGTGCATTGGTGCACCACAAGATTTTTCTCATGTTGTCGAGGGCGTCATGATTCCTCAACAGATGTCTACAAAAACTAAGGGATTTGGCATGCGCAACTTCCCCAATGGCTTCAAATTCATTGCTTTGACGTTTGCACTAGATGAGTGCACACCTGAGACTCCAACCACACTAAGAATAACCAAAGGTAATTTGTTTGATACAACTTTAAACTGGAAGAGAACGAACACCTTGAAGATTTTACAATACCTGAAGATGCAAGAAATTCAGTTGATCATCACAAGCAAGGTCATGTCCGATATGGTTATTCATTTGTGTAACCAACTCAATATTGCTGTTATTCACTCCATTCCTATAGAAACCATTAGTTATATTTGCAATGTTTTATCTATACAGCCTTTGCAAGATTTAAATCTGGACAAGCCAACATTACCAGATATTTTCCAGGGAAGTGCAAAGTCTTGTAGTCCAAAAATTATTGGAAACCAGAAATACTCTCACCTAGTTCTTGGCGTCAGTGAAGTCTCAGCTCATCAGATAATGTTATGTGGACCAGCTGAGGGTCTATGTAGACAGTATTACCTTGCTTTATTGGATGCACTTAAGGCTATTAAGATGACTTTTAGTACAGATAGGCGGGCATTATTGCTTTTACCAGGTTGTGGTTTAGTTGAAGTTGCCCTCGCTAGTGACTTGCAGCATTTGTCCAAGATGATAACAAATACAGAGCTGGCCCTAGCTTGCCAAATACTTGGAAAGTCACTCCTACAAATCCCTAGAACTCTGTATCAAAATTCCTTTGCAGGTAAGCAGGGGCTACAACAATTTTTAACACAATTGCAAATAATGGAAACTTCATGGAGGAATAGTAATCTGTCTGAAGGCATTGATGGGAGAACAGGGCTGCCCATCAACCCATTCGTTCATGAAATTCTTGAGCCTTTGCTGGCAAAGAAAGATACACTACATTGTGTGTTCCAATGTGTGACACAGGTCTTGAGGATCAATCAGGTACTTGGAGTCGCTTGTCGACCAAAGGAAACAGTAGATGAATCTGATGACTAATATTGCCTTATTGATGATAATATTTCCTATTTTCCCATTTTGGCTGGTTTTCTTGTGGGCATAAAGTACAGATGTAAAACTGTATTTACTGTTCTATGCAGTATGTTACTACTACTCTCCTCTACAGACCCCTCCAGGTTTAAGAAAATCCAAAacctaaataaaaatatagttAAGGGAGCCCTCTGTAGTAAGCAAACAAGGTATATTAGGGGAAAGGTGATAATAATCATAACAGAATAAAGGTTAGATTTGAGAGTTCAAATTATTATAGCAGCAATCATGCCAATTTAATACTGGCAGGCCGATGGAAACCTTAACTGAAATTTCCAAGACATGTCATTGCATTTAGGAAGACTTGACTTAAGCTCCTTACTGAAATAATTTGTGCACATTGCAATGCAAGAAGGCGCACTGGACAGCTGAATGGCTGATCCCAGTAACAAAAAACTCTTTTCAAACCAGGATGTAGAAGGCTCCAAGCTAGGTGCTTCTTTTGCTCTTTGGTTTTGActgaagcttggagcctcttgTATCCAGGGCAGCATTATTCCCATCATTTTTTATGGATATAACTGGACTTTATTATTACTTAATTTGACTCTTACAAAAAATTTAAAGGTTAAGTTCCGCCTTGGCAGCTCGTATTTGCACTCATCCTCTAATCACAAGAAAATGTATGACGGCATCCCCAATAAAAGCGAAGCAGGAAAAAAATCCAAACgcctgaaaaaagaaataattttgttAGCCTAAATCACAGGGATTTGTTAATGCTATGTAGTTAAGGCCCATTAAAACTggagaaaataa

Protein

Uniprot

Uniprot term	Description
P39078	T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CCT4 PE=1 SV=2
Q6FQT2	T-complex protein 1 subunit delta OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=CCT4 PE=3 SV=1
Q75A36	T-complex protein 1 subunit delta OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=CCT4 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR042619	Family	Bardet-Biedl syndrome 10 protein	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14667	BARDET-BIEDL SYNDROME 10 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19401	BBS10; Bardet-Biedl syndrome 10 protein	-	Cilium and associated proteins	ko03037	deepkoala