Genomic Location: NC_064046.1:9021235...9024471
NR annotation: XP_001638467.2, LOW QUALITY PROTEIN: peptide methionine sulfoxide reductase-like [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5518530 |
| Transcript |
| rna-XM_001638417.3 |
| Protein |
| XP_001638467.2 |
| UniProt accession | Description |
|---|---|
| P08761 | Peptide methionine sulfoxide reductase OS=Drosophila melanogaster OX=7227 GN=MsrA PE=1 SV=2 |
| Q9SL43 | Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana OX=3702 GN=MSRA5 PE=2 SV=1 |
| Q551H3 | Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum OX=44689 GN=msrA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004522 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20939 all species → | MsrA_helical | Selenoprotein methionine sulfoxide reductase A, helical domain | Domain | Interproscan |
| PF01625 all species → | PMSR | Peptide methionine sulfoxide reductase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049006 all species → | Domain | Selenoprotein methionine sulfoxide reductase A, helical domain | Interproscan |
| IPR002569 all species → | Domain | Peptide methionine sulphoxide reductase MsrA domain | Interproscan |
| IPR036509 all species → | Homologous_superfamily | Peptide methionine sulphoxide reductase MsrA superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43774 all species → | PEPTIDE METHIONINE SULFOXIDE REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008113 all species → | Molecular Function | peptide-methionine (S)-S-oxide reductase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07304 | msrA; peptide-methionine (S)-S-oxide reductase | EC:1.8.4.11 | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of XP_001638467.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 59.66 | 67.01 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 38.50 | 46.19 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 59.82 | 68.01 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 180.10 | 215.86 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 59.15 | 79.14 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 3 | 257.59 | 334.33 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 59.57 | 77.98 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 155.44 | 174.68 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 269.70 | 343.74 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 368.15 | 413.39 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 364.32 | 395.37 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 87.75 | 118.92 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 70.25 | 81.05 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 3 | 102.49 | 115.98 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 161.28 | 187.05 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 3 | 253.95 | 289.29 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
