Gene detail

Detailed information of XP_001639596.2 in Nematostella vectensis

Genomic Location: NC_064037.1:7484278...7488342
NR annotation: XP_001639596.2, nuclear inhibitor of protein phosphatase 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001639546.3

GTCCCAGTCTCTATCTTCTGCTCATTGAAGGTGAAGAAAACAAATGGCGGACACTAAGGTTGAGTCGGGAACCGAAAAAATCCCGAAATCAGGCCCTTCTCCTGCCGCTAAATCCTTGCCATACCAAGTGCCTTCATGGGCCGGCAAGCCTACACAAGGCCTTCATCTAGATGTTATGAAAATGGACAAACTAGTCGAGAAACTCATCATAGATGAGAAGCCGTGTTATTTATTTGGGAGAAACAAGGACGTCTGTGACTTCATGGTGGAACATTCCTCATGCTCGCGTGTTCATGCAGCTCTGGTGTTTCATCGGCACCTCAAAAGATGCTTCTTGGTGGACCTTGGAAGTACTCATGGCACCTACATTGGAACAATAAGAATTGAGCGTAACAAACCCACCCAAGTTCAAGTTGACAGTGTGATACGGTTCGGTGCATCAACTCGTACATATACTCTCAGAGAGAAGCCTACTGGCTCAGGGAGCAAGGTGGAAAAGGGAGATGGTGATATTTCACAAGACAGTACTACAGGGGGACTGCTAGGATTACCAGAGTCAGATACAGAGCTTGATgatCTCACAGAGTTCAACACTGCCCACAATAAGCGTCTAGCGTCAGTTGGTCTGGAAGAGTCTACAAGTAGTCTTAGTAGTTTATCTTCCCTCAAGCGCAAGAGACGAGCATCACATATTGTGGCTTTCAAGGATGTAGAAGAGATTATTAATCCAGaggATGTTGATCCAAGTGTGGGGAAGTTTAGGAATATGGTACATACTTCAGTTGTTGTTCCAACCAAGAAAATGCGAGGGGCTGGACCTGGTGGGGGACCTACTATGACGGAAAACATCACAAAGCGACTGCAAAATTTTCCTTACTCTCAAGGCTTATACACCAATCTACCATCAGCAACAGGGGAAGAACCTACAAGTCCAACCTCCCCTACTGCATCCCTTCCCAAACTGAACATCACATCAGCTCCCGAGGTCATTTCTCCTGACCAACAACAGATAAACATTGAACCTCAACCTTCTGTCGTGCAGCCTGTAGCTATGCCAGGCGTACCAGCAGAGGCACCTAAGAAGAAGTATGCCAAAGAGGCGTGGCCTGGCAAAAAACCTACACCGTCACTACTGATATAATAGTCTTTTTCCTTAAAGTTTAGATAGGCTCATTTATAGGCAATGTTCTTGGATGCATGTCTAGAGGGGGGTCAGAGGGGTCTGGGGAAATGAGTTCGACTCTGCTCAACCCTTTTGTTGGCAGAGAAGATGGTTAATTTTATGTGTGTATTGAGAGCGCAAATTTCTAGATGGATCTGTTCACCTATTACAAGAGCTAAGGGTGCCGATTTGAGGTTGAGCTTGATCTGTGACTTACAGTACTACTGGACCCCAGCCTGCCTTTGCCTCTGTTACTTCTTGTTTAGTTCAACATCGTGAGGTAGGAGGGTGATGCTTTAGAGTCCAAAGTGCCAGGTTAAACAGTGATGAGAATTAATTATAACCACCAATAATCTGTTAAAATTTCATATAAGCTTTCTTTCAAACACTTCAACTTTATCTCAGTACCAAATGAGTAAATTATAGGCATTATCTCTCAGGTTCAGCGGATAACATTTGTATCACCCTTTTAAAAGGCTCCCTCTGGGGTTTGTAGATAGCTTTGACTAGCTGCCCAACCTTTTGCAATATCATTGCTTAAATGTTCTTAATAATGGCACACAGCTAGATGCAGGGGTGCCCCCATGGGTTCAGTAGAACTGTCTCTAACCAAAAGGTACTTTGGGATAAACAATCATAAAAATCACCTTTTAAATGTTAGTAGGAATTATGTGTTATATGTTAGTTTGCTAGCTAGTTCATGTCTTATGGGAGTGTTCTTTAAATACCCTGAGAGGGAAGAGGGAGGGAGCGAAGATATTGGGGGATCCCAAAAACTTTAACCACCCAAAGCTCCGTAAAAAAGGGCTTTCTAAGGGGTGACAAATTTTTGTATGAGTTCTACTGAAATCCTGGGGGTTgttaaaggggggaggggctgcacatttgttttctttacacTGAAGAGTTGGGatctgaaattttaaggtgaACTAAGTCAAAATCTCTtcctccacccctcccccttactcGGGATATTTAATGAACGTAAAGTAAGATTACCCTTTTGTggtaaataaatgaatataccccctTTTCAATAAGAACGGAATATGGTGAATTTTGGATATTTGTTTATTCAGAAATTGTTGAAGGTATTAGGTACATAAACATTGTTTTGTGGTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28147	Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus OX=9913 GN=PPP1R8 PE=1 SV=1
Q12972	Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens OX=9606 GN=PPP1R8 PE=1 SV=2
Q8R3G1	Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus OX=10090 GN=Ppp1r8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR050923 all species →	Family	Cellular Process Regulator and RNA Processing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23308 all species →	NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004865 all species →	Molecular Function	protein serine/threonine phosphatase inhibitor activity	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0035308 all species →	Biological Process	obsolete negative regulation of protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13216	PPP1R8, NIPP1; nuclear inhibitor of protein phosphatase 1	EC:3.1.4.-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001639596.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

16.0Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	6.21	9.54
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.03	7.82
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.02	7.46
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.35	8.18
whole 6 week old aboral regenerate · regenerate uncut	3	3	5.92	7.05
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.98	15.81
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	5.52	9.02
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	10.62	15.64
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	5.62	9.45
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	5.31	8.06
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	6.64	8.08
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	8.26	8.35
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.44	9.72
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	6.29	10.36
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	7.12	7.69
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	8.25	16.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.54
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.09
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.82
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.14
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.12
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.46
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.40
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.21
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.18
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.20
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.68
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.05
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.53
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.18
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.81
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.13
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.02
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.55
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.64
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.77
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.44
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.45
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.39
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.06
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.88
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.08
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.39
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.46
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.35
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.33
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.10
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.72
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.92
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.67
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.36
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.51
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.69
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.38
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.28
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	16.03
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.71
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.