Gene detail

Detailed information of XP_001639626.1 in Nematostella vectensis

Genomic Location: NC_064037.1:8064771...8068103
NR annotation: XP_001639626.1, 60S ribosomal protein L23a [Nematostella vectensis]
Species abbreviation NVECT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24JY1	Large ribosomal subunit protein uL23 OS=Bos taurus OX=9913 GN=RPL23A PE=1 SV=1
P62750	Large ribosomal subunit protein uL23 OS=Homo sapiens OX=9606 GN=RPL23A PE=1 SV=1
P62751	Large ribosomal subunit protein uL23 OS=Mus musculus OX=10090 GN=Rpl23a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007717 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03939 all species →	Ribosomal_L23eN	Ribosomal protein L23, N-terminal domain	Family	Interproscan
PF00276 all species →	Ribosomal_L23	Ribosomal protein L23	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012678 all species →	Homologous_superfamily	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013025 all species →	Family	Large ribosomal subunit protein uL23-like	Interproscan
IPR019985 all species →	Family	Large ribosomal subunit protein uL23	Interproscan
IPR005633 all species →	Domain	Large ribosomal subunit protein uL23, N-terminal	Interproscan
IPR001014 all species →	Conserved_site	Large ribosomal subunit protein uL23, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11620 all species →	60S RIBOSOMAL PROTEIN L23A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02893	RP-L23Ae, RPL23A; large subunit ribosomal protein L23Ae	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.