Gene detail

Detailed information of XP_001639880.2 in Nematostella vectensis

Genomic Location: NC_064036.1:12260117...12271213
NR annotation: XP_001639880.2, tRNA-splicing endonuclease subunit Sen54 isoform X1 [Nematostella vectensis]
Species abbreviation NVECT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C2A2	tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus OX=10090 GN=Tsen54 PE=2 SV=2
Q7Z6J9	tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens OX=9606 GN=TSEN54 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005149 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12928 all species →	tRNA_int_end_N2	tRNA-splicing endonuclease subunit sen54 N-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024337 all species →	Family	tRNA-splicing endonuclease, subunit Sen54	Interproscan
IPR024336 all species →	Domain	tRNA-splicing endonuclease, subunit Sen54, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21027 all species →	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000214 all species →	Cellular Component	tRNA-intron endonuclease complex	Interproscan
GO:0000379 all species →	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15326	TSEN54; tRNA-splicing endonuclease subunit Sen54	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.