Gene detail

Detailed information of XP_001640802.1 in Nematostella vectensis

Genomic Location: NC_064039.1:13647153...13652711
NR annotation: XP_001640802.1, protein FAM166B [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001640752.3

TAAATAAGAAGTTAATCTGGTCAGAGAAATATCAATAAGAGACAAAGCCTTCTCGACCCCACGTTGTATTCCTTGGCAACGACTATTTTGACAAGACAGAACGAGTCGTGGACGGAGGAGAGCAGTACAAACATGGGCTTCACCGAGTTAACACATCCTCACATCGCTAGTAACTTACCGGGTTACCGTGGCTATTGTCCGCAGCTCAAGTATGAATGTGGCCATACTTATGGCATCGCGACCGACAAATTAACTACAAGACACATGAGAAATGAGAAGCTAATTACCACACGTCTGCCCGACCCCAAGGAAAGAGAACAGTTTCTTCCACAACCTAACGGCGTAAACAAACTAACGGCAAATATGAAATTAGGATACACAGGGTATATCCCCACGATGCGGTACCTGTATGGTTCCCGCTACAGGGAAGCCACAGATCAAGCCATTAGCGACTTTATGCAGAAAGACGAGAAGTACCGCAACGAATCGGACGACTTAAAAAAGACAGTATACTCCACAAAGAAGTTACAACCGAGAGCAGACCACAAAGAACCAAGCATGTACCCCGACCTGCGCCCACGATACGGCAAGGACTACTTCCCAAGCGAGCACCGCGAATTCACAGAAGCTCCGCTGCCAGGTTACACGGGCTACGTACCGCGCAGACGCGCGCATGACCTGGGCATGAGGTATGGCACGTGGTCACAAGCCGGCTTCTCTAATTCGCTAGAGATGAGAAACAAGCAAGAAAATCTAGCAACACAACGAATCGACGTCACTAAgtatcccgagCCTACCGTAACGGCCGAGCTTACATCTCAGGGCACGCTGTATAAATTGATGGGGATGAAACCAAAGTATACTGGCTATATACCACAGCGTCGCTTCAGATATGGAAATACATATGGCGACACGACTCGCTCATTGCCAGTCTGCTTCGATCCCAAGGGATACGCAAGCGCCACCTACGTCACCGTACCGGTCATGTGATCTGTCACATGACACCAATTTTACTAGgttcaaaagaataaataaattctGCTGACGGGTCAATCATCACGGGATCAGAACCCATTGTGATGTATCGTGATATGCTATGggggacagtgctgaataacgtatgcgcatgcgcgtgttctggcgaaaacaaacaaaatctcagtgttgaatcgttcgagtaaaggtacgaaaggctgacttcggtcactgttttgacttactgtacagcattaaaaccatactgtacaaaagatgacagatttgtttgataatgagggagtcataaagactCTTTGTTTGATAGTTTTCTTaacattcgccaaaatgtgacagttagccggtaaaacgccgccatttcaaaacaaaaaggctggtttaaccgcgtggtactggaactagtcttgcgttttcagcactgtcgttATGGGGGCAGTTTGCCAAGGTAAACAAAGGGTAGCTAAGCCACGGTGGCGCTAAATGAGAGATGACATGCGAGGTTTACTAAACCAAGTTCACTGGATCCAGAATTTTACCCTGTAGGATGCTATGTCCCGGAAAAAAAGGATACTAGGAAAATTAGAGCCCTCAACCAAAACAACCAAGGCAAACAAACCCGGTAAATAAGTAGGATGCGATGTCCACTAAAACAATAAAGCAACTGAGCATAGAACAAAGGTTGTACTCGACAGAAAAAAGTGTAGCCACAAGCGTAACTCTTCCTGGTTCACCCAGGAAACGCTTTTGAAGAGCCATCCTGAAATCGGGTTTCCTCACTCAATATCACAACGCGTGCTTCTTAACATCGAAATGCTACTAACTGACCTAACTTGTGTCAAAAATggctttttaataaaaaaaatcatctcgTGAAATggtaaaatataaatttgtaGCACTATTTATTTACAAACACACCGAATAAATTTAGATATATAAACGTTTGCTAAGGTATTAAACTTAAACGGTTTTTTACAAGTAATGTAAACATACttattacaaaataaacattgcacctATGTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RRW4	Ciliary microtubule inner protein 2B OS=Danio rerio OX=7955 GN=cimip2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007957 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10629 all species →	DUF2475	Protein of unknown function (DUF2475)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018902 all species →	Domain	Ciliary microtubule inner protein 2A-C-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22146 all species →	CAT EYE SYNDROME CRITICAL REGION PROTEIN 6	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_001640802.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001640802.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001640802.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

7.3Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	3.12	4.79
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.27	3.94
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.15	1.93
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.32	1.52
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.03	2.86
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.45	1.35
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.82	4.30
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.00	6.29
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.88	3.14
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.05	3.64
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.07	3.18
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.49	6.02
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.88	7.32
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.33	3.98
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	0.76	1.26
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.81	2.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.79
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.57
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.94
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.39
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.48
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.93
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.96
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.57
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.52
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.45
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.99
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.86
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.90
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.35
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.35
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.30
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.18
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.29
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.92
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.80
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.14
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.50
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.64
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.52
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.18
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.68
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.36
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.02
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.44
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.32
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.70
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.62
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.98
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.26
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.03
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.42
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.