Gene detail

Detailed information of XP_001640932.2 in Nematostella vectensis

Genomic Location: NC_064035.1:11205655...11211703
NR annotation: XP_001640932.2, G patch domain-containing protein 2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001640882.3

CGACAGCCAATCGACTTATGATGTCGTCATCTAACAACATGGCGGACGAAAAGTATCCGTTCGCTAATTGTTTTTCGAGTTTTTAGCTTTTTATCGCGTTTTAGCCTACTGAATGAAACTTTAAAATGGACGAACTTGTAGTCGATCTAACCCTTGCACTAGAACGGACCGATGATCCGCAATCTTCGAACTCGGACGCCACGATAGGGCGAAAGGATTCGCCTTCCTCTACTCCGGTTCGAAAAGCTATCAAAAAGAGAAGGGGAAGAAAACGCAGATCAGATTTCCCGTTAACCAAAGATTTGTCAATGCTTAGCGAGGGGAGTAATGATTCGATCGACGAGGCATTGAAAGACTATATCGAAAATATTACCATGATGCAGAGCGATTCTGATGAGGACAGTGCTTTTGCGAACTCTAAACGTCTTTCGATGTTATATCGATATCAAATGATGGAGCCCTATCCCTTACCAGAGCGTCCAGAAAGCGATTCATTCGCAGAGAATGCGGGTGGCAGAAGACGGtctaaaagaaacaaaaagttAAAGAGGACTCCACAGTCTTTGAATTACACCGGAGTACAATTTCAAAGTTCTCCTGAACTGAGTAGTCAGTATAACCACCATGGGAACATAAAGATATCTCATGGACATACGAAATCTCTCAAAAGAAAACATTCCTGTAAATTATCCTCTGCTGAGAGGCAGTCGAtgtgtgatgatggtggccAGGTGTACTACTATGACACTGGGAGACATAGTAGCAGCACCTCTGAACCAATGGAGGTGGGATCATTCCCTAGGCATGGTAAACATTTCAAAATCCTTGGGGCTGACCATGGAAGTACTGATTACATGGGTGAAAATGGTGCAATCTGGCTTCCAGGGAGACATAATAAGGATGACATGATGCTGAACCTTGGCTCAGATAGTGATGCTTCTAGTGATGTTGAGAGCGAGGGGTTCTTTACTAACGATGAGGGCAGATTAGCAGATGACGAACAAGAAGAAAGCTCTTATGAGCATGAGATCCCCTTAGACCCCTGGTGGGAACAGGACTGCAAGGAAATGGAAGAGGATGAGAAATTCAACAACATATTGAATGGAGTAATGGATGAGTATGGCATTCCGGAGACCAACGGGACTAGATCATTCGGGTTTCAGGCACGGTTGAATATGATGTCAATGTATGGAAAGGATAATCTTAAACCAATGCTTATTGAggcaaataagaaaataagcaAGTTCATCCAGGATTCTTCTAAAACAGAGCTGTACCTGCCTCTAAATTCAAGAGCAGAGCAACACCAGATACGAAAGCTGGCTTCCCTTTATTCTCTTCACTGCCTAACAGAGAATTCTACTAGAGACCAAGTTGTGCTCATCAAAACCAAAAACACAAGTAGGCCCGACAAGATTGCTATAAACCGCCTTTTTGGCAAGCAGAGAAAGAACAGGAAAAAAGTCAGTCCATCATCCAAAGTCAAAAAAGCTAGAAAAACGCTACCAGCCTCTGAAGTTGCTGTAGCCCAAGCAACATTGCCAATACCAGAGCACAACATTGGTAACCAGATGCTCCGTGAAATGGGTTGGGTACCAGGCAAAGGACTTGGACCGAATCAGAGTGGAAGGGTCGACCCAGTCAAAGCCACTATGAGACCAAAAGGACTGGGGCTAGGACACACATGGCCCTCATCTAAATGAAATCCACAGAGCTACAGAATTTACGTTCTATGATGTACATAGCATATATCATTCCAATGACGGTTTTACTCTGAATATAATTCTGTTTTTAAATGGCAAATTGTAGTACTTTTATTACATGGAAGTTCAGAGCTACAAAATTAACGTTCTATGATGTACATAGCATATATCATTCCAATGACGGTTTTACTCTGAatatatttctattttaatGGCAAATTGTCGTACTTTTATTAGATGGAAGTTCTTGTAAAATTAGAAAGGCAAATACTATAATTCTGTTGTTTGTAAAAGAATATGAAATGTGTATTTATGGATCATATCATATCTTTCtagatttaatttatttttagccGGGTTTTGTAACCTAAATCCATAAATGGCTAGTAAAAAATTCTCTTTATCAAAAAGAAAGGAGGCGATAGTGTTGCTTCGGAGGCGATAGTGTTGCTTGCCCGAGTGTAAGTTGAGTGTCAGGTCCTTCTTTCGTGTCTTATGAATTAAACGGCAACCGAAAAAGACTATTTGGAGATGCCACTAAAGCTTACAAATGACAGACCCACGAGGTGCCACAGTAGTCTTGCTTCCAATGATACATTGTTGTGGTTCTCTTGACAtaagaaatacattttaaagTGTATTAAAGGCTAACTATAACTATTCCATCAATAATAAACTTGGTAAtgttttaacaaaacaaaacaaaaatttttcaaaatttttttcttaatttaaaataaaattgattaCGCTTCGTATCAATCAGAAAGGTTTAAAGCGgtcaaaaagaaataagtaTAGGCTAATAAAGAGTTAGATTAATAGGCCGTTAGCCTCATTCGAGGTGATTGGCATATACACCTATTCCAAAAtatgttgtcagtgcaaatggcgaatgccAATTGTcgaatggcagttctaagatcGAAAAATACCATGGAACACGTCGAATTTCTACTGAATGCAGGATAATGTGGATAATTTTTGCGATTATAATACTtttcatctttattcttacaaataattatacccaTAAGCAGTGATTGGTCTTGTAACTGCTATTTGCCAaatgccatttgcactgacaacgtttattgaaaatatttacGGTTAATCTGGCTAAGGCCTGGAAGAATGGCTAGTAAAAAATGTCTTTaccagacaaagaaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PE65	G patch domain-containing protein 2-like OS=Mus musculus OX=10090 GN=Gpatch2l PE=1 SV=1
Q9NWQ4	G patch domain-containing protein 2-like OS=Homo sapiens OX=9606 GN=GPATCH2L PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007299 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12656 all species →	G-patch_2	G-patch domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR036867 all species →	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR051189 all species →	Family	Splicing-associated domain-containing protein	Interproscan
IPR026822 all species →	Domain	Spp2/MOS2, G-patch domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14195 all species →	G PATCH DOMAIN CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001640932.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001640932.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

14.2Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	8.27	11.53
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.54	9.97
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	9.52	10.38
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	13.63	14.16
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.82	10.88
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	3.94	11.83
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.00	9.67
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	8.89	9.65
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.62	13.99
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	8.04	12.50
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	10.68	11.91
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	5.96	9.85
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.78	9.37
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	6.16	10.71
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	9.04	10.03
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.64	13.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.53
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.90
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.36
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.97
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.58
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.06
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.38
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.21
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.96
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.16
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.81
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.90
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.88
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.39
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.21
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	11.83
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.67
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.33
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.65
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.65
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.37
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.99
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.87
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.50
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.61
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.91
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.43
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.72
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.85
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.03
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.37
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.07
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.89
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.71
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.78
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.03
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.06
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.02
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	13.93
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.