Genomic Location: NC_064035.1:14802674...14811169
NR annotation: XP_001641503.2, ribulose-phosphate 3-epimerase isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5521822 |
| Transcript |
| rna-XM_001641453.3 |
| Protein |
| XP_001641503.2 |
| UniProt accession | Description |
|---|---|
| Q8VEE0 | Ribulose-phosphate 3-epimerase OS=Mus musculus OX=10090 GN=Rpe PE=1 SV=1 |
| Q96AT9 | Ribulose-phosphate 3-epimerase OS=Homo sapiens OX=9606 GN=RPE PE=1 SV=1 |
| Q5R5Y2 | Ribulose-phosphate 3-epimerase OS=Pongo abelii OX=9601 GN=RPE PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002999 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00834 all species → | Ribul_P_3_epim | Ribulose-phosphate 3 epimerase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000056 all species → | Family | Ribulose-phosphate 3-epimerase-like | Interproscan |
| IPR026019 all species → | Family | Ribulose-phosphate 3-epimerase | Interproscan |
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR011060 all species → | Homologous_superfamily | Ribulose-phosphate binding barrel | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11749 all species → | RIBULOSE-5-PHOSPHATE-3-EPIMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0016857 all species → | Molecular Function | racemase and epimerase activity, acting on carbohydrates and derivatives | Interproscan |
| GO:0004750 all species → | Molecular Function | D-ribulose-phosphate 3-epimerase activity | Interproscan |
| GO:0006098 all species → | Biological Process | pentose-phosphate shunt | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0009052 all species → | Biological Process | pentose-phosphate shunt, non-oxidative branch | Interproscan |
| GO:0044262 all species → | Biological Process | obsolete cellular carbohydrate metabolic process | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01783 | rpe, RPE; ribulose-phosphate 3-epimerase | EC:5.1.3.1 | Carbon fixation in photosynthetic organisms | ko00710 | deepkoala |
Transcript abundance of XP_001641503.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
