Gene detail

Detailed information of XP_001641720.3 in Nematostella vectensis

Genomic Location: NC_064043.1:6542846...6555959
NR annotation: XP_001641720.3, host cell factor 2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5521955

ATGGCGGCGGCCATGAAGTGGAAGAAAATCACGAATTCTACGGGCCCAGTGCCCCGGCCACGGCATGGGCATCGTGCGGTGGCTATCAGGGAACTCATGGTTGTATTTGGTGGTGGAAATGAGGGGATTGTGGACGAACTTCACGTGTATAATACAGCTACTAATCAGTGGTTTGTGCCGGCCGTGAGAGGCGATATTCCGCCAGGCTGCGCTGCGTATGGATTTATTTGCGACGGAACGCGGCTGATTCTTTTTGGAGGGATGGTTGAATACGGGAGGTATTCAAATGAGATGTATGAACTACAAGCAAGTAGGTGGGAATGGAAGAAACTCAAGCCCAAGCCGCCCAAGACTGCTGGGGTTCCGCCACCTTGTCCACGGCTTGGACACAGTTTTACACTGATAGGCCATAAAGCTTATCTTTTTGCTGGCTTGGCAAATGACAGTGATGACCCCAAGAACAACATTCCAAGATACCTGAATGACTTGTACATTATTGATGTGAGACCAAACAGTTCCTTGCACTGGGAATGTCCTCAGACATTTGGCACTATCCCCTCTCCCAGGGAGTCCCACACTTGTGTTGCGCACACTCATAGTGACGGCAAAAAGGCCAGACTGATTGTATATGGTGGGATGAGCGGATGTCGCCTGGGGGATCTTTATCAACTCGATATAGACTCTATGGTCTGGTCCAAGCCTACAGTTAAAGGAGCAGTTCCTCTTCCCAGAAGCCTCCACTCTGCCACCACATGTGGCTCAAAGATGTATGTGTTTGGCGGCTGGGTGCCTTTGGTCATTGATGACGTAAAGGGGACACAGCATGAGAAAGAATGGAAGTGTACAAACTCTTTGGCATGTCTAAACATGGATACCATGACATGGGAGAATATCACAGTGGATCAGTATGATGAGTCCATTCCTAGAGCAAGAGCTGGACATTGTTCTGTTTCTATGAGCACAAGATTGTACATCTGGAGTGGTCGCGACGGTTATAGAAAAGCTTGGAATAATCAGGTTTGCTGCAAGGATTTGTGGTTCCTTGAGACAGAGAAACCACCAGCCCCTAGCCGTGTGCAGTTAGTGAGGGCTAGTACTACTACGTTGGAGGTGTGCTGGGGATCTGTTAGCACAGCTGATGCTTACATACTACAGCTTCAGAAGTATGAGCTCCCGCCTGCTCCATCTCCTACACAGCCCCTAACACCCCAAGCGTCTATGAAGCAGCCAATTGCTGCTGGCAGCCCCACACCCTTAAAGGGTAGCTCCATACCCCCGAGCCCAAACAGAAGCCCAGCAGCCAGCCCTGCGCCGAGTCCCTCTGCAGTTAAACCATTCCATCCTGTGTCTTCTGCGCCAAGTGCCATCAAGTTCCCAGCAAAACCTAATGTCCCTGCACCAGGAACTATCATGCCTGCTCCTGTTTCACACCCTGTGGCTTCACCCAAAGTGGCACAAAGTCCTGTAAGGACTGTTCAGGTCCCAGGAAAACCTACACCATCAGTAACAACAACATTAGCTAATCAATCAAAACCCTTGGTGATAACGACAGCAGCAGCATCACTACATCAAACCAAACTGGTGATTGCTAGTGGGACAGGGACCTCTCCTGTTAAACAGATGGTACAAGCACATGCTCTTATCCAAGGACAGCAAACTGGCATGCCTCAGGGCCTTACCCTAATACGTACCCCCATGCAGCTACCACCAGGTGTGCAGGCAACCATGATTACCAATGCACAAGGTGTACCGGTGATGAGACTGCAAGGTCCTGGTCTTGGCGCTAACAGCCCTCTCACCATTGTCACGTCTCAAATTGGTGGAACAGCTGGTACCACTATATTGCGGTTTGCCACCCCAACTAGCGGGGCGACCTCCAGTAGTGGGCCCACTGTGGTTAAGCTCCCAGCACAGACTATTGCCTCCTCTCTGCCATCCACGTTGGTCAAGGTTCTCCCCAGTGCAACAGCAGCCACAGCTCAAGCTGGCACCCAGAAAGGAATTGTTGTAACCCAGGGTGTGACATCTGCAGCATCAATGCTTGCCCAAGTACCAGTTACCATCTCCATGACAAAGGCACCTGGTGTTGTGCAGACATCAGCTGCTTCCAGTGAACCAACCCTTGTCAGACAACCAATACCTGTTTCTTTACCAGCAAACCTCCCTCCAGGCACTCAAATCAAGGTACTGGGACCGCAAGGCCAGATAACAGCAGTCGGACAGGGTGGCATTCCTGTCCAGATTGCCCTGCAGAATATGAGATCCCAGCTCCCCCCTGGTGTCCAAGTGCAGCAAGGAAAATCTGGCTCCCCTACAGTCCTTCAACTCCCTCTGTCTGCGGCTTCTCTAAAGGCTGCAGTGGCGGGAACAAAAGCCCCAACCACGCAGTCACTAACCCCAACTCTTGCCCAAGCTACGTCAGCCTCCACTCCCACTAAGGTTGTGTTTGTCACTAAGGCAGGGGCTGGCGGCCCTCAGCCTGCCTCTGCTGGCAAGCAGTTTGGTTTGACTGTTGTGACCCAGCTTGAGACCAAACCTAAAGCTGTGACCACAAGTCAGAAGCCAGCTCTTCAAGTTCAAACAACAGTCACAGGGCCTAACCCACAGGGTGTTGTAGCATCTGTTGTAAGCTCTGTAGTTCCCAGTGCAAAACCAGCCACAGCAAGCAGTGCAGTAGTCTCACCAACCCCTGTCGCTGGTATTAGCAGTGCTGCAAGTCTGGTCAAACAACTCATAGCCACAGTGAACACACAGGCAGGGGCAACGGTAAGGGCGATCCCAGCGACAGTTACCATTGCTGGTAGCAGTCCTATCTCAGGTGCCAGCACCACGCAGCTGTCTTTGAGCTCCACTCCAGTTCCCACCACTGCCGTCACGTCCACCCTTATTGCAACGTTACAAAGTCCAACTCCTCAGACTACCACAGTGGCAACCCCAAGAACTGTTATCTCGGCACTGCCTTCTCCCACTGTTGTACCAACGGTCCCACCAGCCAAGCCTGTACCTACACCTGTGGTCTCATCCCTCACAACCCCTCTTGTGTCGGCTACAGTGCTTAATGCCAGTCAGGCGCAGACCAGGGTGGCCACAAGTGTTGCAGCACCAACCTCGGCACAATATTCAGCAGTTACAAGCAGTAGTCCCAGAGGACAGGGTGTGGCTGGAGCCATTCAGACTAGTACCCCCCTTAGTACCCTGTCAAATGTTGCAACATCAGTCACCGGACAGGCAACAGTCTCCTATAATGGTGGCAGTCCTTTGCTAAAGACCTCAAAGCCCACAGTTGTAACATCACAGAAGGGAGGGCGTCAGAGGCCAGCACCAGGTAGAAAGCCACAGCAACCAAGCATCTGGTATGATGTTGGCATTGTCAAGACCACCTCCATGCTGGTCACGCACTACCACCTTGCATCAGAGAATACTAACAAAGAGCCGGAGATTGATGTCGTCAGTACAGAACAGACCTCGACAAAACGCCTGGAGCTTCAACCTGGCACAGCCTACAAGTTCCGTGTGGCAGCCATTAATGTGTGTGGGAGAGGACCCTTCAGTGATGTGTCTGCTTTCAAGACATGTCTACCAGGCTTTCCTGGAGCACCATCAGCTATAAAGATCAGCAAGAATACAGAGGGAGCGCACCTGTCATGGGAAGCACCGTCCAATGCATCAGGGAATGTCACCGAGTACTCTGTCTACCTCGCCATTCGCAGCCAGGCAGCAGGCCATGATATCAAGGACGTAGCTGCCTTGAGCAACCCACCCAATGCGCCTGTGCAACTAGCATTTGTGCGTGTCTACTGCGGAGCACAGCCCACGTGCACTGTGTCTCTGGCTACTCTACAAAGCGCCCACATTGACTACTCGACTAAAGCAGCTATCATTTTCAGAATTGCTGCTAAGAATGACAAAGGATACGGTCCTGCTACACAAGTGAGATGGCTTCAAGACCCTCGGGACCTGAAGGATGGACAGCTTGTTGTTAAACAAGCAGCAAAGCGTGCTGCAACTGATAAGTCTGCTGATGCCAAGAAGCCGAAGAAAGAGAAAGCAAAAAAAGAGAAAGAGCCTGAAAAAGATAAAACAAACATGGAAGTTCCACCAAAAGAAAAAGCAACACTAAACACAGAAAAGACAGACTCGACCCCAGTTGAGACACTTCCTCCTCCCCCATCCAATAGCTAG

Transcript

rna-XM_001641670.3

CGGGTAGGTATTGTTTCCTGCTATGGCCCGGATAacaacaagatggcggcggccATGAAGTGGAAGAAAATCACGAATTCTACGGGCCCAGTGCCCCGGCCACGGCATGGGCATCGTGCGGTGGCTATCAGGGAACTCATGGTTGTATTTGGTGGTGGAAATGAGGGGATTGTGGACGAACTTCACGTGTATAATACAGCTACTAATCAGTGGTTTGTGCCGGCCGTGAGAGGCGATATTCCGCCAGGCTGCGCTGCGTATGGATTTATTTGCGACGGAACGCGGCTGATTCTTTTTGGAGGGATGGTTGAATACGGGAGGTATTCAAATGAGATGTATGAACTACAAGCAAGTAGGTGGGAATGGAAGAAACTCAAGCCCAAGCCGCCCAAGACTGCTGGGGTTCCGCCACCTTGTCCACGGCTTGGACACAGTTTTACACTGATAGGCCATAAAGCTTATCTTTTTGCTGGCTTGGCAAATGACAGTGATGACCCCAAGAACAACATTCCAAGATACCTGAATGACTTGTACATTATTGATGTGAGACCAAACAGTTCCTTGCACTGGGAATGTCCTCAGACATTTGGCACTATCCCCTCTCCCAGGGAGTCccacacttgtgttgcgcaCACTCATAGTGACGGCAAAAAGGCCAGACTGATTGTATATGGTGGGATGAGCGGATGTCGCCTGGGGGATCTTTATCAACTCGATATAGACTCTATGGTCTGGTCCAAGCCTACAGTTAAAGGAGCAGTTCCTCTTCCCAGAAGCCTCCACTCTGCCACCACATGTGGCTCAAAGATGTATGTGTTTGGCGGCTGGGTGCCTTTGGTCATTGATGACGTAAAGGGGACACAGCATGAGAAAGAATGGAAGTGTACAAACTCTTTGGCATGTCTAAACATGGataccATGACATGGGAGAATATCACAGTGGATCAGTATGATGAGTCCATTCCTAGAGCAAGAGCTGGACATTGTTCTGTTTCTATgagcacaagattgtacatctGGAGTGGTCGCGACGGTTATAGAAAAGCTTGGAATAATCAGGTTTGCTGCAAGGATTTGTGGTTCCTTGAGACAGAGAAACCACCAGCCCCTAGCCGTGTGCAGTTAGTGAGGGCTAGTACTACTACGTTGGAGGTGTGCTGGGGATCTGTTAGCACAGCTGATGCTTACATACTACAGCTTCAGAAGTATGAGCTCCCGCCTGCTCCATCTCCTACACAGCCCCTAACACCCCAAGCGTCTATGAAGCAGCCAATTGCTGCTGGCAGCCCCACACCCTTAAAGGGTAGCTCCATACCCCCGAGCCCAAACAGAAGCCCAGCAGCCAGCCCTGCGCCGAGTCCCTCTGCAGTTAAACCATTCCATCCTGTGTCTTCTGCGCCAAGTGCCATCAAGTTCCCAGCAAAACCTAATGTCCCTGCACCAGGAACTATCATGCCTGCTCCTGTTTCACACCCTGTGGCTTCACCCAAAGTGGCACAAAGTCCTGTAAGGACTGTTCAGGTCCCAGGAAAACCTACACCATCAGTAACAACAACATTAGCTAATCAATCAAAACCCTTGGTGATAACGACAGCAGCAGCATCACTACATCAAACCAAACTGGTGATTGCTAGTGGGACAGGGACCTCTCCTGTTAAACAGATGGTACAAGCACATGCTCTTATCCAAGGACAGCAAACTGGCATGCCTCAGGGCCTTACCCTAATACGTACCCCCATGCAGCTACCACCAGGTGTGCAGGCAACCATGATTACCAATGCACAAGGTGTACCGGTGATGAGACTGCAAGGTCCTGGTCTTGGCGCTAACAGCCCTCTCACCATTGTCACGTCTCAAATTGGTGGAACAGCTGGTACCACTATATTGCGGTTTGCCACCCCAACTAGCGGGGCGACCTCCAGTAGTGGGCCCACTGTGGTTAAGCTCCCAGCACAGACTATTGCCTCCTCTCTGCCATCCACGTTGGTCAAGGTTCTCCCCAGTGCAACAGCAGCCACAGCTCAAGCTGGCACCCAGAAAGGAATTGTTGTAACCCAGGGTGTGACATCTGCAGCATCAATGCTTGCCCAAGTACCAGTTACCATCTCCATGACAAAGGCACCTGGTGTTGTGCAGACATCAGCTGCTTCCAGTGAACCAACCCTTGTCAGACAACCAATACCTGTTTCTTTACCAGCAAACCTCCCTCCAGGCACTCAAATCAAGGTACTGGGACCGCAAGGCCAGATAACAGCAGTCGGACAGGGTGGCATTCCTGTCCAGATTGCCCTGCAGAATATGAGATCCCAGCTCCCCCCTGGTGTCCAAGTGCAGCAAGGAAAATCTGGCTCCCCTACAGTCCTTCAACTCCCTCTGTCTGCGGCTTCTCTAAAGGCTGCAGTGGCGGGAACAAAAGCCCCAACCACGCAGTCACTAACCCCAACTCTTGCCCAAGCTACGTCAGCCTCCACTCCCACTAAGGTTGTGTTTGTCACTAAGGCAGGGGCTGGCGGCCCTCAGCCTGCCTCTGCTGGCAAGCAGTTTGGTTTGACTGTTGTGACCCAGCTTGAGACCAAACCTAAAGCTGTGACCACAAGTCAGAAGCCAGCTCTTCAAGTTCAAACAACAGTCACAGGGCCTAACCCACAGGGTGTTGTAGCATCTGTTGTAAGCTCTGTAGTTCCCAGTGCAAAACCAGCCACAGCAAGCAGTGCAGTAGTCTCACCAACCCCTGTCGCTGGTATTAGCAGTGCTGCAAGTCTGGTCAAACAACTCATAGCCACAGTGAACACACAGGCAGGGGCAACGGTAAGGGCGATCCCAGCGACAGTTACCATTGCTGGTAGCAGTCCTATCTCAGGTGCCAGCACCACGCAGCTGTCTTTGAGCTCCACTCCAGTTCCCACCACTGCCGTCACGTCCACCCTTATTGCAACGTTACAAAGTCCAACTCCTCAGACTACCACAGTGGCAACCCCAAGAACTGTTATCTCGGCACTGCCTTCTCCCACTGTTGTACCAACGGTCCCACCAGCCAAGCCTGTACCTACACCTGTGGTCTCATCCCTCACAACCCCTCTTGTGTCGGCTACAGTGCTTAATGCCAGTCAGGCGCAGACCAGGGTGGCCACAAGTGTTGCAGCACCAACCTCGGCACAATATTCAGCAGTTACAAGCAGTAGTCCCAGAGGACAGGGTGTGGCTGGAGCCATTCAGACTAGTACCCCCCTTAGTACCCTGTCAAATGTTGCAACATCAGTCACCGGACAGGCAACAGTCTCCTATAATGGTGGCAGTCCTTTGCTAAAGACCTCAAAGCCCACAGTTGTAACATCACAGAAGGGAGGGCGTCAGAGGCCAGCACCAGGTAGAAAGCCACAGCAACCAAGCATCTGGTATGATGTTGGCATTGTCAAGACCACCTCCATGCTGGTCACGCACTACCACCTTGCATCAGAGAATactaacaaagagCCGGAGATTGATGTCGTCAGTACAGAACAGACCTCGACAAAACGCCTGGAGCTTCAACCTGGCACAGCCTACAAGTTCCGTGTGGCAGCCATTAATGTGTGTGGGAGAGGACCCTTCAGTGATGTGTCTGCTTTCAAGACATGTCTACCAGGCTTTCCTGGAGCACCATCAGCTATAAAGATCAGCAAGAATACAGAGGGAGCGCACCTGTCATGGGAAGCACCGTCCAATGCATCAGGGAATGTCACCGAGTACTCTGTCTACCTCGCCATTCGCAGCCAGGCAGCAGGCCATGATATCAAGGACGTAGCTGCCTTGAGCAACCCACCCAATGCGCCTGTGCAACTAGCATTTGTGCGTGTCTACTGCGGAGCACAGCCCACGTGCACTGTGTCTCTGGCTACTCTACAAAGCGCCCACATTGACTACTCGACTAAAGCAGCTATCATTTTCAGAATTGCTGCTAAGAATGACAAAGGATACGGTCCTGCTACACAAGTGAGATGGCTTCAAGACCCTCGGGACCTGAAGGATGGACAGCTTGTTGTTAAACAAGCAGCAAAGCGTGCTGCAACTGATAAGTCTGCTGATGCCAAGAAGCCGAAGAAagagaaagcaaaaaaagagaaagagcctgaaaaagataaaacaaacatGGAAGTTCCACCAAAAGAAAAAGCAACACTAAACACAGAAAAGACAGACTCGACCCCAGTTGAGACACTTCCTCCTCCCCCATCCAATAGCTAGTAATTGTGGCTTAGCCATGCAgtaaagattttaaaataaccTGGGCAGCTGGCAATTCGGAGATATTTTATAGCTTAGATTGCAAAGTATGATCTAacagtaaacaaacaaatatacttacaattttgttttgcttgaaaataaataagattttATAGCCACTTCCCCATTTCGCTGCTAACACACATATCTGCCATTCCCAAAAACTCCAAAAATGAGATTGACATCTCATCAATATACATCAATTGTATTGGTAAGTTGTGAGAAGTTTACCTCGGAGGTATGCATTAAATATATGGAAAAGTTCCACTTTTTGGGCGAGATAAATGCTGAAAACTCCTGGTTTTCAGACTTCAAGCTAAACTGGGAGAGTTGGCAGGTATGATATATTTTCCTTGTAAAAAAATACGAAATGCTAGCTTTGACAGGTTATATTGAGAGCTTAAAGTGACCTTGTGGTTGAATGTACAGTTGTGAGATAGCTATATAAGCAACCTATTTTATCTATTATTTTGTGGGAACAAGTTTTGGTTGATCGGAAACCCTTTTAGAGCAAGAATAGTAACCTAATATATTACTAATGCAAGAGCCAAGCCTCAATCTGTGGCTGCATGAGTATAGCTTTTGTTTTCCTATGTATAGAAACAGtgtgttttcttgatttttcttGTGCACTTTTTTAAGTGAAAAGAAAGTGCTGTTCCCCTTGAGCCACACTGTGCAGTGATAAAAGCAAGCATTCCAATCTAAACTCTCATCTGACTTTTTATACCCTGTAAGTATGTCTTTTTTTAGATGTAGAAAGTCATGAATATCTGTTAAGTGTGAAGGTCATATTTCCATATTCCCAACCTGATATACTATACAAATAACTGTAGAATACTGTGGCATTACAAAATTCTCCCTTGTCCTATCCTTCCATGAGCAGTCGCAATACACTTCCACCAAGTTTCAAACATTTTCACCAATAAATGGCTTGTTCTCTCGTGGTTTATAGCATATTTTGAAGTTTAAGTATAATTTTAGTCTGAAAATGACAGGACCTTGTTTGTACACAAGGTTCAAAACCTTGTAGATAGGAGAGGAGTATGTTGATCATTAAACAGCATTTTACAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51610	Host cell factor 1 OS=Homo sapiens OX=9606 GN=HCFC1 PE=1 SV=2
D3ZN95	Host cell factor 1 OS=Rattus norvegicus OX=10116 GN=Hcfc1 PE=1 SV=1
Q61191	Host cell factor 1 OS=Mus musculus OX=10090 GN=Hcfc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004526 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13854 all species →	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR043536 all species →	Family	Host cell factor	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46003 all species →	HOST CELL FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035097 all species →	Cellular Component	histone methyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14966	HCFC1; host cell factor 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.