Gene detail

Detailed information of XP_001642042.3 in Nematostella vectensis

Genomic Location: NC_064036.1:15180178...15184334
NR annotation: XP_001642042.3, fibrillin-1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001641992.3

TTCAAAACAAAGCTCTTGTTGACACTAAATATAGAAATGGGGTAATACCCTCGATTTCTTAGAATTCTTGTTTTCCGTGGAGCAACTTGATTGGCTAGAAGTTTCACACAATAATGAGCACAGCTAATGAAAGAACTCGATGTTCGTCGATACAGCAAGCATCACAGTTGTATTTGCTTTCAAAACAGTCTTCGCGAGAAAGTAGAAAGGAAAACGATTTCCAACCGTACTAGCACATAACAGTTTACAGGTATAACAAGAAACTACAAGATGAAGTTACAGCCGATGGAGATTAAAGACATGAAAAAACTGTGCTTTGCAGTGATCGGCGTTATCGTGATCATCGTGGTTATTATAGCAGCGATTCTATCAGCCCATGGCTCACATCCTAACTCTGCAAAATGTAAAGGCTATAGATACTTCAGCATGCCGACTGACCACAAGGGGTCATTTAAAGGCGATGGTCAAATGTGCAGCGAAACTGATGAATGTTCTGCAGGAAACCACACATGTGACAAAAATGCCAAATGCAACAACACCATCGGCTCGTACCATTGCACATGCAATCCAGGGTTCAGCGGAGATGGAAGAAATTGTACCGACATTGATGAATGTGTAACAGGGAACCACACATGTGACAAGAACGCCAAATGCAACAACATCATTGGCTCGTACCATTGCATGTGCAATCCAGGGTTCAGCAAAGATGGGAGAGAATGTACCGACATTGATGAATGTGTAACAGGGGACCACACATGTGACAAGAACGCCAGATGCAACAACATCATTGGATCGTACCATTGCATGTGCAATCCAGGGTTTAGTGGAGATGGAAGAAATTGTACCGACATTGATGAATGTGTAACTGGGGACCACACATGTGACAAGAACGCCAGATGCGGCAACATCATTGGCTCACACCATTGCATATGCAATCCAGGGTTTAGCGGAGATGGAAAAAATTGTACCGACATTGATGAATGTGTAACTGGGGACCACACATGTGACAAGAACGCCAAATGCAACAACACCATTGGCTCACACCATTGTATGTGCAATCCAGGGTTCAGCGGAGATGGAAGAGAATGTACCGACATTGATGAATGTGTAACTGGGGACCACACATGTGACAAGAATGCCAAATGCAACAACATCATTGGCTCGTACCATTGCACATGCAATCCAGGGTTCAGCGGAGATGGGAGAGAATGTACCGACATTGATGAATGTGTAACTGGGGACCACACATGTGACAAGAACGCCAGATGTAACAACACCATTGGCTCGTACCATTGCACATGCAATCCAGGGTTCAGTGGAGATGGGAGAGAATGTACCGACATTGATGAATGTGTAACAGGGGACCACACATGTGACAAGAACGCCAGATGCAACAACACCATTGGATCGTACCATTGCAGATGCAATCCAGGGTTCAGCGGAGATGGAAGAGAATGTACCGACATTGATGAATGTGTAACTGGGGACCACACATGTGACAAGAACGCCAGATGTAACAACACCATTGGCTCGTACCATTGCACATGCAATCCAGGGTTCAGCGGAGATGGGAGAGAATGTACCGACATGGATGAATGTGTAACTGGGGACCACACATGTGACAAGAACGCCAAATGCAACAACATCATTGGCTCACACCATTGCACATGCAATCCAGGGTTCAGCGGAGATGGGAGAGAATGTATAGACATTGATGAATGTGTAACAGGGGACCACACATGTGACAAGAACGCCAAATGCAACAACATCGTTGGCTCACACCATTGCACATGCAATCCTGGGTTTAGCGGAAATGGGAGAGAATGTACCGACATTGATGAATGTGGAACTGGGGACCACACATGTGACAAAAACGCCAGATGCAACAACACCATTGGCTCATATGATTGCATGTGCATGTCTGGTTTCTATGGTAACAGCACTCGTTGTCGTGATATTGATGAGTGTAAAAAAGAGAAACATCACTGCAGTCCTCATGCGATATGTTATAACACACTTGGGTCGTTTAAATGTTCTTGCAAAGATGGATTTCGTGGTAACGGCGTAACTTGCAATGGAGGAAGAACTCTTTCTGCTCCTCATCTCATGACGTTTGTGCTTGGGGCCATAGTGACATTGAGGGCTTGGTCAATCTAGCGTAGTCCAGCACAGCGAATAGGGAGTGACAATCATCGATATcagaaagggggagggaatCAACGTTTTGTTGGAGaacccccctcctccgaccATTTAATCTAATAAAAAATGGTTCTGAATAAAAATTATGTAAAAagta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24466	NOTCH2NL; Notch homolog 2 N-terminal-like protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala