Gene detail

Detailed information of XP_020600581.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1279:20...4551
NR annotation: XP_020600581.1, hemicentin-1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020744922.1

TGTTTATATTATAAACTACGTACATGTTTTCTCTTCAGTTCCCCCTAGAATTCTGTGGATTTCTCCCAGTCAAACAGCCGAACTTGGCAAAGAAGTAACTTTGGTATGCACAGTAACTGGTCGGCCCACACCGCGTGTTGTGTGGAAGAAAAATGGCATTGTTCTTCAAGACAGTGTGTCTACTGGTAACATCACTCTCGTCAACATCTCCTCTGTAGATGGTGGAAGCTATGAGTGTTCGGCGATTAATATTGTGGCAAATGACACGAGAATGACGCAGCTCAACGTTATAGGATTCCCGAGGGACACCGCCATCAGTACCAACGTCTCTGCTAATGTAGCCGCTCTCGGTGAAGCTGTTACAATACGGTGTTCTTCTCTTGGCTACCCCAAACCAATTTGTCGAATTTACCATGAGGGTGCCTTGGTTAACGTCAATGACAGTCTTTATGATATTCGAAACTTCACAGCGGCAGATCAAGGGGAATACACTTGTAACTGCTCCAATACTGCGGCTTCAGAGGAGGTCAATGTCACTGTTGTTCTTTATGAGTCTCCAAATATCCATTCCATTTTTCCTGCCCATCAACTGGCCAATGAAACAGACACTTTTGAGATTTTCTGTAATGCGACGGGAAATCCACCTCCTGTGGTAACATGGACAAAGATTGGCGACAACAACAAAGTCTACCCCACAGGAAAATCACTGAGAGTGCAAAATGCTGAGAAATCAGACTTTGGAACCTACCAGTGCACGGCTGAGAGTGTGCGCGGCGAGAATATTTCCGCTGTAGCTACAGCTGAGATTGACAACTTTTCACCAACGATCGACTACAGTCCACAAAATATCACCATTTtggaaaaagacaaaaggaaTGTTACATTGTACTGCAATGCCACAGGCAGACCAAGAGTTCAGCTGTCCTGGGTTAGAGTTAGAGACGGCAACACAGTGGCTTTCGGAAATACTCTTAAGATCTTGACAGCTGACCGGTCACATCGCGGGGAATACAGATGTGTTGCTGATAATGGAGTTGGAAATCCGATATCTACATCAGTATATATTGATGTTCTTTATAATCCATCATCCACTAGATTATTTACCGATAAAGTGAATGCCGCAGTCAGTGGGAACGGTCGCATTGCACTGTCTTGTGTGACTGACGCAAACCCGCGGCCCAGCCAATACCAGTTTTATCGTGACGGTGTCTACCTTAGAACCAGTCTTACCGGAATACACGTGATCCAGAAAGCCAGATACTATGATGCGGGCACGTATCTGTGTGTGCCACTCAACAGTCTTGGGGTTGGCACTAACAGTTCTGTCCAAGTTTTTGTCAATGGTCCTTTCTCTATCATTCACTTTCCACGAAACATGACAGTGAACGAAAGTGCAAGTGTGTCATTTTTCTGTAATGGTACCTCTTATTATCCATATGAGAGTCTTGTACCTCAAATCTCCTGGACTAAGCTTGGAGACAGCAACAAAGTGTTTCCATCAGGTCAAAAGCTTGTTCTACAGAATGTGAGTCGACATGATACAGGAACGTACGTGTGTGAAGCTAAGAATGGAGTTGGGCTGCCTGATACTGCTACTGCTGTTCTGAACGTGTTACATAAGCCATATGACACCAAACTAGAGGCATCAATACCGGATAACGTCGGAGTGTTAAACTTGTCAATTATCCTGACTTGCAGCGCAAATGCTAACCCACCTGTTACTGCGTATAACATTTACCACAATGGTATCCTAGTGTCTAATGCATCCACTGGTGCCCATAACATCACACGCGCACTAGCAGAGCATAATGGATCATACGTGTGTGTACCTTACAACGATTTTGGGCCTGGAGAAAGAGCCGCCCTGAACGTCACATTTGTAGGTCCTTGTGGTGTTAAACGTGTGTATCATTCATGGTCGCCTCAGATCGTAGCAGGGGAGTACGCTAAATCTGGGGAGTGGCCATGGCAGGTACAGTTGGGATACTTTGACATCAGCGAGAGTATCCCTCACATCTGTGGTGCCTCCATCTTGGATCATTACTGGATTGTCACTGCTGCACACTGTGTAAAAAGTCCATTCAAAGAAAGGCCTGCAGCTAACTTCAATGTCACTGTTGGTAAGTACATAAGATTTTTTGTCCACAAATGGGACATTTGA

Protein

Uniprot

Uniprot term	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00089	Trypsin	Trypsin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR001254	Domain	Serine proteases, trypsin domain	Interproscan
IPR018114	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan