Gene detail

Detailed information of XP_020600638.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_924:1013994...1018591
NR annotation: XP_020600638.1, neuroglobin-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020744979.1

tggACAGGCAATAGAGCCATGCGATTGactgattttagttattggccctctgaaatAACTTAATCATATATTAAAGGCGACAATTAAATAAAAAGGAAGTTATAAATGCAAATCTTGACGCTCCGGCAGGGACATTGCTTATTCGCTGCGCGCAATGGGAAGTTCGTCGTCGCTTTAttatagaaatgaaaaaacGTTTCCAGAATCATTCagcttaaatttaaaatctaaTGCTAACTCGCTTTCCGAAGAAACGAAAAATGTTTTGAGAGAATCTTGGAAACTCGTTGAGCCTTTGAAGACTGTCGCAggaaagaaaatgtttgaacgGATGTTTGGAAGTCACCCTGAAGTAATTTACCTGTTTCCCATTTTTAAAGGCCTAACCCTGAGGGAGATACTTTGTTCTCGGGCACTTCACCTTCACGTAAAGAAAGTCATGTCTGCACTGGAAAATGCTGTGCTATCTTTGAATGACGCGGAAAAATTAACTCACTATTTGATAAACCTTGGCGAAAGACATCGACCATGGTCTGTGAGAATGGAGCACTTTGATCTGCTAAAGGAATCTCTCCTCTGGACACTTCAAGACATGCTTCAGTCTAAATGCACTCCAGGGGTGAGCAGGGCCTGGAGCGAAATGATCGACTTAGTGGCTGAGGCTATGATGCAAGGACTGAAGAGTAGACATCACGTGATCAGCAACCACTGAAACACAACGAAAAAACGAGAATCACCACTGGCGGGAATACTGCCGTCGCTCAAAGAATACAGTGATTCATCCCGTGTCTCCAGCGCAATGATAAAAGTTTTATCTTTGTAATATTCTGTAATATACACACCTTGTGTATATTGTTGAAAAAGGTATAATATAAGCAGTAAAAATGACTTTGCTTTTACAGTTACTTGATAACGGAAAAGTAAATAACagataatgataaaataatatttgagGAGGAGGCGTCCAATCACCTTTGTGGTAGTTTTCAGGGGGGtcctctgaaaaataaagaaaataaaaataaatgaagaaatgaataaaaattagCGATGTAAAACAATATAATAATATCTAAAAACTTAAGACTACAACTAAGGATTAAAACTAGAAATAAGATTAAAAATGGTTTATTAAAAACTGCTTCAGTTTGTGTTTGAAAATCGTTTTTGGCATGAGTCTCTTGAGCAAATTCGACAGAGAGGCCCAATCGGTAACTGCTTTATATTACGttttgatatgttttcattACATACTTTAAAATCTAAATTGCTAGATGGAAATACAAGGACACTTCATTTCTTGAAATGTTGATATTTCTTCGAAGTCTTTCTTTTACCTTGACTGAAGATACTTTGCCCTTTAATTACATTTTGGCGATGACATTCTTGTTTACAGTTAAAACCTGTGCAAACACTCGTGATGGTGAAGATAACGCTACTTACAAATAAGATAATGCGTAAAAGATAAATTTGCATTGTTAGCTGTCGTGTATTTAGCCTGGCCAAATACACTATTACTGAAGTTTTTCCTGTGTAAAGAACCCAGTAAGAGTTACTTCTATCCATATGCTTTATATAGTTCTGCACCGCGCCAAAAAGTATATGGTTTTCCGGCGACCTATAGTCACaaaatttgttacaaattttcattttttgttatcGAACGAGGCACGAGTTTCATTGCCTGTCTTAGATTAGTGGGATAAACTTTTATTTGTGTCAATAAGTATTCAGCTCTAAGCTAAGAGCTAATTGGGGATGTTAAAACGAACAACGAGAAATGAATTAACTGTAAGTATTTCTTTGATGAAGGTTGAAAAGAAGCATGAACAAACATAATTTGGTCATGAAGAAGATAAAGATTTCAAGCAACGTTCGTCAAAATCCCactgaaaataattcagttGTAAAGGAACTATACAAGTACCTCGTTCCCCCGTCCACAAGGGAAACTCGCCCTTTGTATAACATATCTTGTAAACATCTCAAGATAAGAACACAAAGCAAAGCAACAAGCTAAACCTCAGAGCTGTAACGTCGTGGC

Protein

Uniprot

Uniprot term	Description
Q9I9I3	Globin-2 OS=Petromyzon marinus OX=7757 PE=2 SV=3
P02208	Globin-5 OS=Petromyzon marinus OX=7757 PE=1 SV=2
P21197	Globin-1 OS=Mordacia mordax OX=7755 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00042	Globin	Globin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050532	Family	Globin-like Oxygen Transporters	Interproscan
IPR000971	Domain	Globin	Interproscan
IPR012292	Homologous_superfamily	Globin/Protoglobin	Interproscan
IPR044399	Domain	Myoglobin-like, M family globin domain	Interproscan
IPR009050	Homologous_superfamily	Globin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46458	BLR2807 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001666	Biological Process	response to hypoxia	Interproscan
GO:0005344	Molecular Function	oxygen carrier activity	Interproscan
GO:0015671	Biological Process	oxygen transport	Interproscan
GO:0019825	Molecular Function	oxygen binding	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21893	NGB; neuroglobin	-	Transporters	ko02000	deepkoala