Gene detail

Detailed information of XP_020601991.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1354:665728...669309
NR annotation: XP_020601991.1, leucine-rich repeat-containing protein 74B-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020746332.1

tctgttcctcaaagctcactgTTTTCCTCGAACTAAGCTTTCGGGAAAGTGTTCGCTTCtggaaacagataatgtccgcggataAATATCTCGGCagattttcgcgccaaatggaggctattgtatATACATACagtccaacccctattaagcggccacccctattaggcggccagtaatcaaagtcccgatgggGGCTTTTCTACTGTTTCTACCTCTgctaagcggccactatccatttctccgagggtggccgtttaataggggttgaactgtacttACAATAACCTGTAAAGTTCCGTACAACAGCAGTTTACGATGCCGTAGTCGACAATTTGTTGTATATTTCTCTAACAAAAAAAtttcgatcgtgattggttctcggTGTACCTATTTGGCACGTAATTGGCGCGCGATCTAGTGGATgtccaattacaactttttgtaattgggtACCTGTACTTGGATAGCTACACCAATTGCACGTTAATTATGTGCGCTTTATAGCTTCCTCGTAAATGTTtcctactttttttttaacttatttaaagCAATACTGACTTTTTCGTGCCAAAGTTCTTCAAATTACCCGCGCGAATATTCCTTGAttttgtactccactcagtccaattattattactaataaaacaattaattatgaTCCTGTTCAATATGGGCCCGAAGTTTCAACTCGGCATGAGGCTGACGTCTAGATCGGGTAATTATCGGACGATACTTCTTGCTATTTCGCTTGTAATTGCTCGTCGAGTGAGAAATCACAGCTTATTTTACACGTGGTACTGACGTCACTGCAAAACTTCCTGTTGATCCACGAGATACCAAAATATTTATAAGAAGAAACTTCGGTATTGGAAATTTCCCGTCTCACTTCTGATCCTGGTAAACGTATTGGTTTCTGTAAGTACATTTGTGTTTACATTTGGTGACGGTAATTTCCACTATGATTCGCTAATCTTATTTTCTATCACCAAtagggtaattttttttcttcaaataccTTATTACATTCGATAATGTCCGTTAGTGCAACAGTGTTTCCAAAGTCTCAATAACTAGCAATTTCCAACGCTCTACTAATATCGAATATGAATTTTTCAACGTTCaaatacacaaacaaaaaacttcGCTAACTTTAACTTAGCCTGCAAGGAAAAGAATTCAGTCCACTCAGAATTCCGACTAATTTATGTGAAGGAATTTAGCCTCTTGAACACAATTTTAAATATTGAGACTGAAAGCCCAATTAACACGTTAACTCTGTTCacacttttttcaaactaaaacctCATCAAAAACGTTTCGACAAAGCACTAATGAGGTTGGTCCAGAGGCTGTCCTTGTTAGAAAAACTGGAAGTTTTTCAAAATCCAGAAGAAACCTTTTCTGCAGATAGAAATATTGTGACAAATGTCCCTGTAGAGGCCAATATCGTAAAGTGCGACGCCAAACAAATAATAGCTTTCGATCATAAGCTTAATCGTGTAATTATGACAGCTAAACCACATTTGCAAAGGCGTTTTACCGATAAGGCATTTTACCGTAAAATGTGCGAAACCAATCCGGAGCAGGTGAACAATATAAAGACCTACACAACTGGATACTTTGAGAAAACATCTCGAAACTACAGTTGATGTTCGTAGCTTTAAACTACATGCCTAAGGCTTTCATGGTAACAAAATGGTAACAAAAAGGGGAAACTCTACCTGCCAGAGAGCAGATGTAGTATAGCAGGTTTGTGAAATATTAtggagctttttttttttcttgtaatgttCATGCTACCTCTGTCTTTCAATCTGACACTAACTTCGTTAACGAACTTCTCCCCCGTTCCGAACTCGTGCGTTTCAGTTTCACGGCTTCAACAGAAACCCCTATGGGATTCTGCTGGTTATAAATAGTCAATGTTTTTTCcaaataactaactaaatagataaataaatatataaaaattcgtttttgtttatttaaagcgCGACAGCAGCCTAAGTCCGCTAATACTTAGACAGAACGTTAGGTAAGCACCGGgactttttagaaaatgaaCATAACAATCCATGTTTCATGTCCGTTCGCGCAATCTATTgatttttctgtcttttccCATCCATAATATTGATTGTTGCAGGACCTCGGTCAGGATGGACGTGGAACAGAGCTCCTACGAAGGTTTCCTTTCGGAACCCTCCAGTGGCGATGAAGGCGGGTGGGACACGGACTTGGAAGAGTCGAGTTCAGCAACAACACAAGATGCTGCACCGCAACAGATGTACTTTACAGCTTGCACTCAGCTCGGAATACCACCGGCATCAAAATTCATCAAGCAAATGACCACCAGTAAGGTCGACCTTCGACACTATGGTCTCCTTGACCAGGGAGTAAGGGCCATTTCGTACGCGCTAAAACGGAACATAACAGTGGACACGTTGAATCTCCATGACAATGGAATTACCGAGACGGGCGCTAGAGCTCTTGCAGACCTGCTGGAGGAGAATTGCTTCATAACCAGTCTTGACATATCTGGAAACAACATCGGCATCGATGGAAACCGTGCCATGGAACGAATGCTCAGAAACACATCCGCTCTCAAAGAGCTGAACGTTTCAAACATCTGTCGCAGTGCCGGACAGATGCTTCCTCTAATAGAAGGACTCAAAGAGAGTTTTTATTTGAAGGTATTAGATTTGAGTCACAACTGCCTTGACGATCAAGGAGCCGTTATGTTAGGCTCTATTTTGTCCGCAACGAGTTCACTAGAGTCTTTGAATGTCAGCTGGAACAACATATCTAGCAGAGGAGCTGTAGGTCTCATGGATGGGCTGCGAGAGGGCTACACTTTAAAGAAGCTTGATTTATCTTGGAATAGCCTAGCAGGAGCGGCTGCACAGGCCTTAACAGGCGCTCTCGAGGCCAACGAATCCCTAACGCATCTGGATGCTACCAACACTTCTATCGGCTTGCCCGAGGCAAAGATCATCGCTAAAGGCCTGAAAAGGAACAGGACTCTTCAAGTGCTACGCATCGGAAAGAACCCATTCTTGAGTCCGGGTGCTCACGCGTTGTTGAAGGCAATTCGGCGAAATCACGAGAATGCCCTTCAGGAACTTCATCTAGAGGGCATGGCTCTTGATAGAGACTGCCATAAGGAGCTCGAGGAGGTGCTTCAAAAGCGACCCGAGTTCAACTGTACCTGGCAAATAAGTATCCAAGGAGGTCAAGCCAGAGATGTTCGGAGCCCAGGGAAAGTTTCGCCATTGGATACCTTCGTGCGGTTCGCCCGCAACAGTGGTCTGCGAATGGTGGACTTGTTCAAGGTGCTTTCTGCCAAACGTGATACGATTGGACAAGACGCCTTCATCGCGGggttgaaaaaaatgaacattgcAATGAGCAAGGCTGACCTGATGAAAGTTTTTGCCACTCTTGACGTCAATAATGATGGGAAGCTACAGTTTCAGGAATTCTCGAATCTAGTCGCCCTAAAGCTGCACGAACAAAACATCGAAAAGAAGAACTGCATAgcagaaaatcacaaataaaaagataaagtaAATCCTTACG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR052394	Family	Leucine-rich repeat-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24114	LEUCINE RICH REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan