Gene detail

Detailed information of XP_020602008.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1354:728881...782958
NR annotation: XP_020602003.1, chordin-like protein 1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020746349.1

taaaaaaaatacactctTTGTGTTTCACTCGCAGTGCGGCAGCATTAAGATTTCCACTTGTTGCAGATTTGGTTCTCGGCAGAAACGACTCTCTCCATCAAACGCAGATCTTCTGATACGATGAACCTGTTTGCTTGGAAAACTTGAAGCCGTTCAGGAAAGTTCTGCATACGTCTGCAAGGCCAAGCAAGGAAAACAAGATGGAAGGTCGTAGCCCCCTTTTTGGGAAGACGAGAAGTTTCTGcATAGCTATCCTTGGGATCGCAATTTTTGCCAGATCTTGTGAAAGCAAAGTGGATCCCCCTCAACCGACGTCACCAGCTGTTACTGCCAAGCCACCGCAGTGCTCGTTTAACCACATCAACTACAACGTGGGAGAGATCTGGAATCCATTTCTGTTACCGAAAGGATACTATCGCTGCAAACGTTGTATCTGCAAATTGTCAAGCGATGGCGCCTTGGCAATAATAGACTGCGAAGGACGACGGTGCAGAAAACCGTCATCGCATGCAAATCCCGCGCATAACGAACAGCAAAGTAATTGTAGTCACCAAGGTACCCTGCGGAGTCATGGGACAGTGTGGAAGGTGTCTACCACGGGTCTAAATGTCACGCTTGCCAATCACTGCATGGAGTGTAGCTGCACGGATAGTTTTGTGACCTGCGCCATCAGAACATGTCCAGTCCTTTCCTGTGTGAATCAAACAAATACAGACGGAACATGCTGTCCTGTTTGTGCAGaaagTTTACCAACACTGCGAAATCCAGTGGGCTGCCAAACAATGGGTAGATACTACGATCATATGGAATCCTGGTATCCCAGAAGACCTCCAAGATACGACATGTGTATCAACTGCACTTGCAAGAACACTTCAATAGAGTGCAGCCTTCCAGAGTGCCCCAAGATAACCTGTGTTAATCCTCAACGAAAACCGGGAGATTGCTGTGAGACCTGCCCAGAGACACCCAAGCTAGATTGCGAGTGGAATAACAAGTCGTATGCTCACAATTCTTCATTTAATCCGGTCGTTGGCAATTTTGGACCTTCTTACTGCGTCACGTGCTTCTGCAATGCCAATGTAATAAAATGTAGAAGTAAATCATGTCCAACGAGTTACCCGTGCAAAGATCCAGTGTATGTTCAAGGAAAATGCTGTAAGGTGTGTGAAGATTCCCCAGGAAATCATACAAACGGAAGGAACCTTTGCAGTGCAGGAAAGCACTGGCTGGTCTACGAGTATATAAAGATTCcaagaaatcaacaaaagaacGCGTCCGAAGTACGGGAACAATTCGCACTGGAGCACAAGGACCACGATACGGTGGAGATACACACCATTTACGCTAACATGACAGCAAAAGTTATAAAGACCACGAATACTACCAAAAGCCAGTTCCatggaattttgaaaaaaaatggcaaagattATAAAATCCTTGGAAAGATTCGTGAAGTTCAGAAAAACAAGATCAAGACTTGGGAGCAACGTGCCTGTCATCACACTCAAGGCTGTATACATACAGTGCGAAAAATAATGAAGGGACTCTATGAACGTGTGAGACGGTGCGGCGATCATGCCACATCAGGGCCCCCACAAACACTCCTTCAACTTCAACCAGAGAATCCTTGAGATCTTAACCTGTGCGACGATCGACAAATTAAACATGGAGTACGTTTTGACAAATGAACAAAGCCGCTGTACGTAACCATCGCATTAGACCACCACATCGGTACGTGTTTTAACAAGAAACCCTCGTGGTAGTTCATTGACAGTTTTAGGCCTTTCTCTGAGACGTTTCTGTGAgcgcaagaaaaacaacaagcaaacaaggAAAATAGACATTTTTTCTTAGAGATAAGTAGTTTGGAAACTTTACCATAGATTTGTATAGCTCCTGTAAATAACGAGTTTATGTGGGCTTCTTAAACGACTTGGCAGAATTTGTTGCCAACAGAAGAAATTCGTAGGCAAAACGTATATCCGTTGATTTGATTATAGAGCATAAGGAATGTGAGAATAAAACCTGTAAGATTTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00093	VWC	von Willebrand factor type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001007	Domain	VWFC domain	Interproscan
IPR045717	Family	Chordin-like protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46303	VWFC DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0036122	Molecular Function	BMP binding	Interproscan