Gene detail

Detailed information of XP_020602256.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1363:398722...411108
NR annotation: XP_020602256.1, BET1-like protein isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020746597.1

aacaaaacaagatggcgacTCGAGGTGGAAATAATCGAGGCTACTCCCAACAATTTTGTTAGGTTGTCTGAGAATTTGTTGGTGCCCATTATTCAGGCATGGGTTCAAGGACCACATCAACAGATGAAATGTTGGAGACTGAAAACAATCGAATGGTGGATGATTTGGCAGCTAAAGTTTCACGTTTAAAAGGGATTGCTATCGACATTGAGAATGAAAGCaagcaacaaaataaatacCTTGATGGAATGGGAGATGACTTTGGCAGTTCATCTGGTTTGTTGAGTGGCAGTGCTGCACGACTGTCACAAATGATTTCATCCGGACGATcaaacagaaaattaatgtGCTACCTAATAGCAGGACTTGTGGGATTCTTCTTCATTGGATATTATGCACTCAGCAAGGTCATTGTCAGATAGTCAAAAGCACTAGCaagcaaaaataattacatctttttattttacgaGTACAAACAGGTGTCATTGCACTGTAGATTAAACATGGGACCCAGATGTGTTgaacaaatgcaaataaatgcatacatgtatgtgctcTTGTGTCAATGGGAGTGACAGTATTGTCGAAGCCTGAAACATTACTGAGAGGAAAGACATTTTTGGCAGATTGTCACCCCAGGAAGAATTGTACATTAAGTCACTTCAACATCATGCCTAGCTTTGCTTTAGATTTCTTGTAATGGTAATCACTAGATGTACTCAATAACAGTGCAATCCAGTGTCTGCccagacaagtagattttcccacTGTTAAGGAACTTCTCATTCTCACTTACCcagcaagtcatctgccaacacaaaaaaatgtaaactaagaTTTGCTTGGGGCAAGCAAAAtctgagagctgcttgtccaaagggcaagctggaattcaagtttttctcGAGCCCTGGGTATGTGCAGTATTTGATATGTTATAAGTATGATGAATCAACGTTAATTAGAGACTTGGAAGGAAAGCAAAGGAAATGGAAAGTTTCTTCCTTGTTGGTCGGCATAGCTTTAAGACTTGCAATCAAAATGGATGACCCTTCTGGTTAAAACTTTATTCTCCGATTCAAATTTCAGAGTTCAACAAAATGCAATTGTAACCTTTGTTCAGTTGAgctgaaaaaattcaaactgctaTGAATTACTGACAGGAATAATGATCTTACTTTTGAAAGCAAATTGCGTTTCACCTGTTTACTTTTTGACTGTAGAAGACTTACACAGAAATCCTTTGCTATCCAACAATAGTCTTGCTTTGCTGTTCGTGATTACCATAGTGTTAATTACCtcactaaaaattatttaaaattatcctAGTTGAAATTTAAAGATTGTAAGTTagtaagttatttattttagagGTGCTTTGAGAAGGAACCCAAGTGAAatgtataaaattaattaatgaaaacaacagttgaaagaaatttacggaaaacaaacatttgaactCTTGAGAGAATTTAAGCGTAGTTTAAGATAGCAGGGGTTTGAAATACAGTACCTAAATTAGCATATTCAAGCcaagaaaatgatttgaattcaAGATAGCGGGGAGTTGAGATACTAAGGTGTAACTGTACTAGTTTTGTGCAAAGAAAGTTAGATACAgtagaatcccgatttctcaaaccctcattttttgaacctcttgataactcgaaccaaaagtcgtttcccctccgcagtcgaacactgtaattttacccccaatttctcaaactctgcgatttttcgaaccagttttcttttcccttgggggttcaaaaaaaaaaatcaggattccactgtagatAAGACCAACAAACACATGTGATCTATTCTTTAAtattaacattttattgaatatttcttcataattataaaaaaaaaggcagTACATGAATAGCAGTACATAAAAATAGCAGTACATGAATGTTTATGAAAACGTTTTACTTGTACATATACATTTACTTTCATGTTATTTTATGAAGTTAATTACCAACAAGAAATGGTCAATATTAATACCATTAGGAAACACCCTTTAAGGAGGTATACTTTAAAAGCCATATGTCTGTAAACATGTGTTGTtgatgagaaaatgaaattgggcaaggagaatttacattttgatgaccAATATAAACTAGAACTTTTACTTCCATTTTCTTGCGAAAACACACACTCAGGCTTGTCAGtgcccacagcatttcttgttctcccaaacttcctgtcatgtttctataactaaaCATAAACATTAAAAATGTATGGACTTTGTCGAATATTATACAGTCATGCCAATAAATAAACCTTACACCTGAGGTGCACATTACTGTTAGTTTAGAAGACAAATGTCTGTTAAACAAAAACTGTTGTAAAACCACCTTGGAAATTAAATGCACAGAATCATA

Protein

Uniprot

Uniprot term	Description
Q5RBX2	BET1-like protein OS=Pongo abelii OX=9601 GN=BET1L PE=3 SV=1
Q3MHP8	BET1-like protein OS=Bos taurus OX=9913 GN=BET1L PE=3 SV=1
Q9NYM9	BET1-like protein OS=Homo sapiens OX=9606 GN=BET1L PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000727	Domain	Target SNARE coiled-coil homology domain	Interproscan
IPR039899	Domain	BET1, SNARE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12791	GOLGI SNARE BET1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005484	Molecular Function	SNAP receptor activity	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:2000156	Biological Process	regulation of retrograde vesicle-mediated transport, Golgi to ER	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08504	BET1; blocked early in transport 1	-	Membrane trafficking	ko04131	deepkoala