Gene detail

Detailed information of XP_020602445.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1382:584530...588898
NR annotation: XP_020602444.1, homeobox protein PKNOX1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020746786.1

TTGACGTTGATGAGTGAGTGACACCGTCGCTGTTCCATCGCCTCgtgcatttctttttaatagtGACCAATTAGGCAGCCATCGAATGGAAGGGCTTGCGAATCGAGTGGCTCCAAGTCACATGCTTCAAGCCCAACAAAACATTGCTGGTTCAACTCATTACGGAACCATATCTTTACAACAGACACAACCTGAAAAGATGCCACCTCCATCTTATGAAGAATCCCAGTTAGCCGTACAAGCGGTCGATATGCAACAGATCACAAACATGGAGGCAGAAAAGCAAGCCATTTATCGACATCCCTTGTTGCCTCTTCTTGCTAAGCTGTTCGAAAAGTGCGAGCAATCTACACAGACATGCGATTGCTCTCCCGCTAACGCTTTTGACAACGAGATCAAGAATGGTATTTTACAGATGAACAGGGAAGGAAAACCCTTTTACACCGACGATCGAGACCTTGACAACTTGATGGTGAAAGCTATTCAAGTCCTCAGAATTCACCTCCTTGAACTTGAAAAAGTCAACGAACTATGCAAAGATTTTTGCCAGCGGTACATAGCTTGTCTCAAAGGGAAAATGCAGAGTGAAAACTTACTACGTAGCCCTCTTCAGACAGCTTACTCTCCTgcagtaaatgtaataaactcaAATGTACAACAACAGCAACCAACAACACCAATCCAGGCACAACAGCCGACTTTCATTCCACAGCAACAAATTACTTACTATGCTGCACCAGCTGTGACACCATGTACTGTGGCAAATGCAACTCCAAGTGCGAGTGTCATTGCCTCTCCAATACAACAGCAGGTTGCAACAGTGACATACGTTCCCCAGGGAGTAGCACCTGGGCAGCAGATTGTCATAGCACAGGTACCCCAACAACCAGCTGTGGCAACTAGTGTGACTTATACCAGCAGCACAGTACCGGCAACCATGACATACTCTACAGTGCCGGCAAGTGTGACATATGTGAGTACACCAGCGATCGAGACTGTGACACCACCCAGACCACAGACACACTCCTCGGGAGATGAATCTCCAACTGAAATCACTGTTCCGTCTAGTGTTCCGCTCCCTGCATTGGATTCTCCAACAGAAGTAACTGACAAGAAGCGAACAAGACGAGGGGTTTTACCAAAGCAGGCAACAAATATCATGAAGACATGGCTTTTTCAGCATCTTGTGCACCCTTACCCAACCGAGGATGAGAAGAGAACCATCGCTGCACAGACAAACTTGACGATACTCCAAGTCAACAATTGGTTTATCAATGCAAGACGTCGTATTTTACAACCCATGTTGGATGCCAGCAATCCTGAAGGACCGAAagctaaaaagtcaaaaatccAAAGTAGACCAGCGCAGAGATTTTGGCCTGACAATCTTGTTCCCAGTCAGTTCAACACCATTCCAATAGCACCAGCACCAGTGACTGTCCAGGCGGCCATGATGCAGGGAGCCGTCCAAATGCAGGCAGTACCTCATGGTGCGACAGTCACTGTGCCGCCAGGAGTGGCATTACCAACTACTATAACAATACCTAATGTGCAAGGGACCACAGTTATCCCGGGAACTGTCACTTTGCAACAACAACCAGGCACACCAACCACAATGGTGGTTGTAACATTACCTCCATCAGCAAGCCATATCAGTACCGTGTCAGCATCAGAGAGTTCGTCAGCTGTAACAACACATCCCTCAATGATTGCATCAAGTGTTTCGTCGCAAGTTGAAACTGTTTCCGTCAGCAATTTATCTCCCATGTACAGTAACATTCAGCAGGGAAGCCCATCAATGCAGAATTCGCCGTTACCAACCATGGTTCAAAATGGTTCTATGGGGAGTGGAGAGAGTACCCTTGTAAGTTCTCCGCATCACTTGCCGCCCTCAAGTGTTAGTATTGCTGGTGTTCAAGACAGTCTGGTGGGAGTAAACACAATACCATTAGAGTCAACAGCAGTTTCCAGAGGTTTAGTGAACTGACCTCCAGAATATGTTGTCTTCGCATCTTTGTGgttttttaaatcaaatcttGTACCTTCTACTCTCAAGTTCTTGTTACTGTAACTAGCTAGAGAAGTATGCCTCTGGTCATTTCATAGAGAGAGACAGAGATTCAAACTGAAACATTCCCAGTATTTCAGTTCTCTCTTCTGGCTTTGATTTAATAGTTTTTCCAGTTTATGAACAACCACTGCCAATGCATGGATTTTCAGTTGAATCTCAGATGGCTCT

Protein

Uniprot

Uniprot term	Description
Q96KN3	Homeobox protein PKNOX2 OS=Homo sapiens OX=9606 GN=PKNOX2 PE=1 SV=2
Q8BG99	Homeobox protein PKNOX2 OS=Mus musculus OX=10090 GN=Pknox2 PE=2 SV=1
Q5R6L1	Homeobox protein PKNOX2 OS=Pongo abelii OX=9601 GN=PKNOX2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920	Homeobox_KN	Homeobox KN domain	Family	Interproscan
PF16493	Meis_PKNOX_N	N-terminal of Homeobox Meis and PKNOX1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050224	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR008422	Domain	Homeobox KN domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR032453	Domain	Homeobox protein PKNOX/Meis, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24891	PKNOX; homeobox protein PKNOX	-	Transcription factors	ko03000	deepkoala