Gene detail

Detailed information of XP_020602543.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1396:725606...764407
NR annotation: XP_020602543.1, ATP-dependent RNA helicase DDX54-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110041576

ATGATGGCCAAAAAGAAATCGTCAATATTGTCAAAGGGTAAGCCGAGTAAGAACTTCCAGCAGAAAAGGAACAAGAAAGGAGGGAAAACGACGCCACAAAATCTCAGGAGAAAGAAGGCTAGAGATAAGGAGACTGATGATGAGGTAGAAACCAGTGGACTCTATAACCATGAAGAAGATGCAAATTTTAGGCAAGATGATGTTGATGATGATGATGATGATGACACTGTACTCAACACAAGAGGACTTGTCACCGAGCATAACAAGAAAAAAAAGAAGTCGGGAGGATTTCAATCAATGGGGTTGAGCTTTCCAGTGTTCAAAGGAGTCATGAAAAAAGGTTACAGGCTTCCTACACCTATTCAAAGAAAGACGATACCAGTGATTATGGATGGAAAAGACGTGGTAGCAATGGCTCGCACAGGCTCTGGGAAAACAGCTGCCTTTTTGATACCAATGTTTGAAAGACTTAAAACCCATTCAGCCAAGGTTGGTGCCCGAGGGTTGATCTTGTCACCCACACGTGAGTTAGCCCTCCAGACTCTCAAATTCACCAAAGAGCTTGGTAGATTCACTGGTTTAAAGGCAGCTGTGGTGCTTGGTGGAGATAGTCTAGAAGGGCAGTTTGCAGCATTGCATGGAAATCCAGACATTATTGTGGCCACTCCAGGACGGTTTCTTCATGTCATGATGGAAATGGACCTGAAGTTGACTGCAGTAGAATATGTTGTGTTTGATGAAGCTGACAGGCTCTTTGAGATGGGGTTTGCTCAGCAACTTCATGAAATTATCAATCGTCTTCCAGATTCCAGACAAACCCTTCTGTTTTCTGCAACTCTTCCAAAATTATTAGTGGATTTCACGAAAGCAGGTTTAACTGACCCTGTCCTTATAAGGCTGGATGTTGACTCCAAACTAAGTGAGCAGTTAAGGCTTGCTTTCTTTTCACTGAGATCAGATGACAAACCAGCTGTGTTGTTGCACATTCTTCAAAACTTGGTCAAACCATCTGAACAGACCCTTGTCTTTACGGCTACAAAGCACCATGTGGAATACTTAAAAGAGCTGCTAGAAGTCGCTGGAATAGAAAGTTCCTTTGTTTACAGCACCCTGGATCAAGCAGCAAGAAAGATCAACATTGGCAAGTTTCAACACAAGAAAACGAACGTTATGGTCGTCACTGACGTGGCTGCTCGTGGAATTGACATCCCGATGCTGGATAACGTGATCAATTACAACTTTCCAGCCAAACCAAAGCTTTTTATTCATCGAGTAGGTCGGGTTGCAAGAGCTGGTCGCAGTGGAACGGCTTATTCTCTCGTGGGTAGTGACGAGTTAGCTCACACGGTGGATCTTCATCTTTTCCTTGGTCGACCGCTCAAACTGGCAGGGAAAGACTCGCAGGCTCAAGATGATGGGCTCATTGGCGCGGTTCCTCAGCTACTCGTGGATGAGGAACAGAACTTTCTCAAGAGAGCACATGATCAGTCACATGACCTGATTTCTCTTCGTCAAGTGGCGGCCAACGGATACAAACAATACATAAAATCCAGGCCAAGTGCTTCCTCGGAATCTGTCAAGCGATCCAAGCAAATCGACACAGCTACTCTCCCAGTTCATCCACTGTTCAAATCTGGTGTTACATCTTCCAATGTGGCTTCTACTTCAAGAGTCGATATTTTGGACGGTGTGAGGAATTTCAGGCCGAGACAGACAATCTTCGAGATTGGTTCTACGTCAAAATCCACAGCGCAGTCTATCATGATGTCAAAAAGAAAACGTCACAGCGACGTCATTCAAAGAGCACAGCGACTCAAACAGGACGACTCAGTGACTGACCTGGGGAGGGGTGCTGGCACCGGAAGTGAAGAACAGAACAATAGCGCAACTACGGACGAAATTAGGGGAGTCTTCGCCACCGTGTTCGATCCAAGCCAGAAAAAGAAGAGAAAGAAATCAAAGTCCGATCCTCAAGGTTTTTCCATGAAGAATTTCAGAGACGAGAACTACATTCCCCATACCGCCTCGGATCATTACGGCGAGAGAGGCCTGGGGCTTGGTTTGAAGTCGTTTGAGAAGGATGTATCAGGTGCTGTGATGGACATCCAAGCTGACGAAGAAGAAGGAATGAGACAAGCCAAGTCGCTCAAAAAATGGGATCGTAAGAGGAAAAATTATGTTGGAGAAGATGGTAACGTGAAAAAACTCAGAACAGAGAGCGGCGTGCGGATCCCAGCAACCTACAAGAAAAATATATACCAAGACTGGTTACGAAGAAATAAGATGGACGTTCCCGGATCAGAAGATCGCGAGGAGAATGGAACGAGGCCAGGTCACAAAAAGAACAGAAAAGGTAAAGGCGGGAAAAGCTTTCCTCCCAAAGGTAAAGGTTTTGGCGGGAAAGGCGCTAAACCGCGTGGAAACGAACTGAAATCCAAGGACCAGATACTGAAGGCTCGGCACAGAAAGGAAACTACTATGCAACGGCAAAATAAAGGAAAACTAAAAGGAAAAAGGGGCAGAGGAAAACCAAGTAGAAGAAAGTGA

Transcript

rna-XM_020746884.1

ATGGTTAAATGGCGGACGAAAAAGACTTGTCgtaatttttgcctttgaatGGTTTATTTTCGCATTTTGTCAGAGAATAATTCGTTAGTTGTTATCATTACTATATATGATGGCCAAAAAGAAATCGTCAATATTGTCAAAGGGTAAGCCGAGTAAGAACTTCCAGCAGAAAAGGAACAAGAAAGGAGGGAAAACGACGCCACAAAATCTCAGGAGAAAGAAGGCTAGAGATAAGGAGACTGATGATGAGGTAGAAACCAGTGGACTCTATAACCATGAAGAAGATGCAAATTTTAGGCaagatgatgttgatgatgatgatgatgatgacactGTACTCAACACAAGAGGACTTGTCACCGAgcataacaagaaaaaaaagaagtcgGGAGGATTTCAATCAATGGGGTTGAGCTTTCCAGTGTTCAAAGGAGTCATGAAAAAAGGTTACAGGCTTCCTACACCTATTCAAAGAAAGACGATACCAGTGATTATGGATGGAAAAGACGTGGTAGCAATGGCTCGCACAGGCTCTGGGAAAACAGCTGCCTTTTTGATACCAATGTTTGAAAGACTTAAAACCCATTCAGCCAAGGTTGGTGCCCGAGGGTTGATCTTGTCACCCACACGTGAGTTAGCCCTCCAGACTCTCAAATTCACCAAAGAGCTTGGTAGATTCACTGGTTTAAAGGCAGCTGTGGTGCTTGGTGGAGATAGTCTAGAAGGGCAGTTTGCAGCATTGCATGGAAATCCAGACATtATTGTGGCCACTCCAGGACGGTTTCTTCATGTCATGATGGAAATGGACCTGAAGTTGACTGCAGTAGAATATGTTGTGTTTGATGAAGCTGACAGgctCTTTGAGATGGGGTTTGCTCAGCAACTTCATGAAATTATCAATCGTCTTCCAGATTCCAGACAAACCCTTCTGTTTTCTGCAACTCTTCCAAAATTATTAGTGGATTTCACGAAAGCAGGTTTAACTGACCCTGTCCTTATAAGGCTGGATGTTGACTCCAAACTAAGTGAGCAGTTAAGGctTGCTTTCTTTTCACTGAGATCAGATGACAAACCAGctgTGTTGTTGCACATTCTTCAAAACTTGGTCAAACCATCTGAACAGACCCTTGTCTTTACGGCTACAAAGCACCATGTGGAATACTTAAAAGAGCTGCTAGAAGTCGCTGGAATAGAAAGTTCCTTTGTTTACAGCACCCTGGATCAAGCAGcaAGAAAGATCAACATTGGCAAGTTTCAACACAAGAAAACGAACGTTATGGTCGTCACTGACGTGGCtGCTCGTGGAATTGACATCCCGATGCTGGATAACGTGATCAATTACAACTTTCCAGCCAAACCAAAGCTTTTTATTCATCGAGTAGGTCGGGTTGCAAGAGCTGGTCGCAGTGGAACGGCTTATTCTCTCGTGGGTAGTGACGAGTTAGCTCACACGGTGGATCTTCATCTTTTCCTTGGTCGACCGCTCAAACTGGCAGGGAAAGACTCGCAGGCTCAAGATGATGGGCTCATTGGCGCGGTTCCTCAGCTACTCGTGGATGAGGAACAGAACTTTCTCAAGAGAGCACATGATCAGTCACATGACCTGATTTCTCTTCGTCAAGTGGCGGCCAACGGATACAAACAATACATAAAATCCAGGCCAAGTGCTTCCTCGGAATCTGTCAAGCGATCCAAGCAAATCGACACAGCTACTCTCCCAGTTCATCCACTGTTCAAATCTGGTGTTACATCTTCCAATGTGGCTTCTACTTCAAGAGTCGATATTTTGGACGGTGTGAGGAATTTCAGGCCGAGACAGACAATCTTCGAGATTGGTTCTACGTCAAAATCCACAGCGCAGTCTATCATGATGTCAAAAAGAAAACGTCACAGCGACGTCATTCAAAGAGCACAGCGACTCAAACAGGACGACTCAGTGACTGACCTGGGGAGGGGTGCTGGCACCGGAAGTGAAGAACAGAACAATAGCGCAACTACGGACGAAATTAGGGGAGTCTTCGCCACCGTGTTCGATCCAAGccagaaaaagaagagaaagaaatcaaagtCCGATCCTCAAGGTTTTTCCATGAAGAATTTCAGAGACGAGAACTACATTCCCCATACCGCCTCGGATCATTACGGCGAGAGAGGCCTGGGGCTTGGTTTGAAGTCGTTTGAGAAGGATGTATCAGGTGCTGTGATGGACATCCAAGCTGACGAAGAAGAAGGAATGAGACAAGCCAAGTCGCTCAAAAAATGGGATCGTAAGAGGAAAAATTATGTTGGAGAAGATGGTAACGTGAAAAAACTCAGAACAGAGAGCGGCGTGCGGATCCCAGCAACCTACAAGAAAAATATATACCAAGACTGGTTACGAAGAAATAAGATGGACGTTCCCGGATCAGAAGATCGCGAGGAGAATGGAACGAGGCCAGGTCacaaaaagaacagaaaagGTAAAGGCGGGAAAAGCTTTCCTCCCAAAGGTAAAGGTTTTGGCGGGAAAGGCGCTAAACCGCGTGGAAACGAACTGAAATCCAAGGACCAGATACTGAAGGCTCGGCACAGAAAGGAAACTACTATGCAAcggcaaaataaaggaaaactaAAAGGAAAAAGGGGCAGAGGAAAACCAAGTAGAAGAAAGTGAACTGAAATCAGTCCGAGGGGGTAACGCCGAGTAGCGCCTGTTTCGGTTAACACTTAGCCTCGGGCTGTTTTCGGCCCGAAGTGTTCCGATTCTtactggccaatcagaaaacaacACGATGACTCCGAACTTTGTTGCGTCTTGTTACCGCCGTCTAAGCACGTCATATTTCATTCCATACctccatatcgcgggctcagtgAGTAGGTGTTTGCTTCCAAATGAAATCAGATATGCGTCTTGTAATTTGTTGTAGCCAAGGCAACAAACCGCATGAATGATAAAGGCACTGTGCAGAGACGAAAAGACggctacagtggaacctcgatttaacgatcCTCTAATTAACGATggcctcgatataacgaacctcgatata

Protein

Uniprot

Uniprot term	Description
Q8K4L0	ATP-dependent RNA helicase DDX54 OS=Mus musculus OX=10090 GN=Ddx54 PE=1 SV=1
Q8TDD1	ATP-dependent RNA helicase DDX54 OS=Homo sapiens OX=9606 GN=DDX54 PE=1 SV=2
A1DNG2	ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF08147	DBP10CT	DBP10CT (NUC160) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR033517	Domain	DDX54/DBP10 family, DEAD-box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR012541	Domain	DBP10, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14808	DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala