Gene detail

Detailed information of XP_020602888.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1416:166972...175632
NR annotation: XP_020602888.1, uncharacterized protein LOC110041902 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020747229.1

tcgcagaggtcatgggttcgagtCCCAttcaagtctgaattttttttatcaggctttaattttacaactgctgCAGAGGTACACAAATCAATGGAGGGTTTATATCTGGGGGTCAGATGCTTATAaccagaataattttttttttgttcatataGAGAAGGACCTATTACCGGGAGGAGGGCATATAACCGAAATTTTACGCGATAGCAGTTTGTTCTCGTTTTCCCGAATGATTGCAGTTTTTGCTTTTGGGTTAAGTTTTACAACAGCTGCAGAAGAACAGTGCTTGCCGCAAACTCGTCGAACGTGAAGAAGATGTTAGACAACTTTCTTGCTGATAATGTCACAGGCAGGTCAATTTTCCTAACCGTGCTTTTTGCTGCGAAAGTTGTAATACTGTTCAATCTTATTTAATGGTGCGTCAAGCTTTATGCGTCATATGTTATTTTGAACACAAATATAAGACATATAGGTTAAAATTGAATCTCTCAAGAACTCAACTGACACTGCAATGGACTTCACAGCATGCACTTAAGGATACATTGTCATTGTCATGAGGCTTTGACAAATTTGCCGAATTACATAATCGTGACACATTCACGTATTTGCGCAAAGAAAAGCAATTATGACGCACACTGAGTACTTTTCCGAGCTTAATCTGTAAAATCCCTTGCGTGTTAAACAAGGAGCTCTTTCGATTGTTGCAAgtgcttgagtgttcttctACGCAAGCGGACAGGAATTTTCCTTTTGCTTAGGTTTTACGATAGTTGTTTAAAAACCGCGATCGAtctataaataaatttaaaggagCCGCGTTGTGGTTTAATTTCCCAATCTTGACAAATCTTCCCTGCAGAGCTTTCCACGGTTGACCATTCCAGCGCAGCCCGTCTTGATCTTCGCTAGCCTTACTCATCATAGTTCATTTTCGGTTTCCTGTAACATCTTTGGGTGTTTCTTCCATTTGGAGTTTTTCGTTGAGAAATTCTGTTCATCAGTTAAAAAAGAGTACTCTATTTCAACAGGATGACATAACTCTAAGCTTTTTAATCATGTATACGAATGTAGTAAAGTACATCCGGAAAAACGGTACTTAGTGATCAGCCATCGATACAACATTAACTGACAACAATAACGTAACAATGCAGTCAGATATTTCCAACGACTAGCGGCGTGAGTGCTTGTTTTCGCCATCCTTAACGGGGTCGTTTAGGAAACCTTTCGCTTGTATAACCGTAAGTTAGGAGTGTCAAAAGTCTATTCTAAAAATGTAGCTATCTTGTTTTGATCCTGATGCAACTATGGCAGCCGATGTGGTAATCGTAGCTCTTAGAAGATGAAAGTTACTTCTTGTGGTTATGTTAGTAAAAATTTCGTTATAAATAGCTTCTTTTTACGTCACTTAGTTAATCTATATTCAtaaggttgttttctttcttaaaatgaacaaaacgcACCGTGCgtgattgtaaattttttttttaaaaaaaggctcATAATTACGTCATTTGATCCATATATATTCATTAGTTGGTGAaggttttttactttttgcctTTTGTCAGTTGAACAAGATACCATCAGTGCATGCCTACCGCTTCGAAATTCCAAGGCCAACAAACATTGCAAGGCAAACGCaggtaaaaaaaagttaatagaCCACTCAGTCCACAATGTTGTCCGACTTAAGTCTGCGAAATTCAGCTAAAAGCCAAACTAAGCCATTGCGAGGACTCGAGAGATTATGAAATTGGAATGAGCAGTACTGCCACTGATGTAGCGCACTTTGCTCAGCAATACAAGTCtggctgttttttgttttttttttccaaacgaAAGCCGACTACGCAACATAACCTTTATGtggaattgtttgtttttcaatactGGTCAACACGAAATTCAagtaattaatttgtattttgcttCTGAAAGAGTTTTCAGGGCCACCCTTTTCTAATAGCGTGTAAAACTGAGAAAAGGATTCATGTATAAAGTCGTATCGTAACTGCAAAACGTGAAAGTATTTTGAAGTCCTTTTTcttgaacaaaataaacacaaggGAGGTCAGGTACTCCGGAAACGAGTCGGGCTTCTCTTCACATGAATGAGAACAGGGCGGCGCGCAGCTATCGATCGACGATAAAGCAGATATTCAAACAATAACATCTCCGGTGAAAGAGGCCATTTACATTACAGGGCGTTTTGGATATCAAATTCATGTTTGACTTCTTTCAAAGACTGTAAAAATCAAGATTTGCAAAGGAGTCAGATCAGATACCTCTGCCATGCCCCTGGCTGAATTCAGCCCAGGGAATGTAACAATCTTATTGCCCATATAGAACACATCTATTCACTTTAATAGGTAAGGTGTAAAGTGCTTTCCGGGGTTAATTAGCGCTAAGACACTTCGTTGGTGTTAAGTGATTAATTTAGCCCATTACGACCGAATTGAGGTGTGGTAGTAGATAAAatcttttttctattatttaaGGGCAAAGGGCGGTCTGACCTTCTCAGAAGTTTAAAATCATTAGCTTATAATATGGTAGCGGTTTTTGCGTTTCTTCTCCTAGAGCAAAACGACTCCTTAAAACCAAATACCGCCAATGTGAATGTGAATATGTGCTAGTCTTTTTGTGTACTTAACAAACACCACAGCAATAAAAAAGGTTCTTTGATCAACTAAGATGGCTTAATTTTCTCAATTCTTCCACAAGTCATTAGCGAACAACGGAGTTCTATTGAGCAGGGATAAGCTTTGAATGAACACCAAGCGAGAAAGCCCCGTGAAAATGCGCCCTAAATTGCCCGCATTCAATCAGTGCATTTATTAGTCTATTTCCGGTGTTTATCGAGCTGTTAAttatttacacaaacaaaagatTGTACAGCATGTCAGTTTGCGAATCGCGCTCCTTGAGATATCACTAATTGAGTGATGGGGCCGTGTCAAGTTGATTATCCAATCAAGGCTCTGCATGTTGTGTAGGTTTGCGAGTCAACGTCTCCCATTCACTTGTTATTAGGTCTGGCGTAAAGTGGTCAGTAAGATGCGGGTTTCACTGCTACAAGGATTCATCGTGCTTTGTATCGCCCTTCATTCGTTGGATATTTCACTTGCATCCAAGCGACAAGGGCAAAATAAAGAAGCGAGACTGACGCTGAAACCCGTCCACGGTGGCCAGCTTACGTTGTCCTCGGGCAGGATTAAACTCGGGGAAGTGTATTTGTCAGGAATTAATGGTCTACGCGGAGAAAGGGGAGAAAAAGGGCCCAGAGGTGATAAAGGCGACCAAGGAGAAAAGgGTGAGAAAGGAGACAGCTGTTCGGACAGTTGCTGGAAAACTGCGGCATCAATTCTCCGCCAAACTACATCCGAATCTTGCAATGCTCGACTTGAAGGCGAACTGAGATACGACAAAACATCTGGCAAGCTCAGCGTCTGCAGCAGGAAGCAGTGGAGAGAACTGCAAACTGTCCCACGGGGAGAGATTAACAACTCACCGCCAAGAAAGTCCTGCCTTGAAATATTGTTCAAAGGAGAAAGTCAGGGCAATGGCATGTATTGGATTAATCCAGCGGTCACCGACCCTGAAAGGAATGCATTTCGCGCCTACTGCGACATGACAACATCAGGGGGAGGCTGGACTCTTGTTGCCAAGGTAACGCATGACTACAGCTGGGTGTGTCCTGACAGAGATGGGGGCATGTGCCTAGGATCCAAGACCAACCCCCTGACAGCAAACCTTTTCCATGATATCCACCAACGGGACAGCGTGGACATGTCCATCAAGAGCAACGCAGACGCCGGAATCCATTTGAATGACACAATCATTCGATTGCTCTTCGTATCTGGTCGACAGTCTGTTCGGTTCACCTTCGTGGGCTCGGGAAACGGTTGGACGCCAACGGAGGACGCGTACGCGGCATTTAACCCGAGCAAAAAGAACTCGATGTTCGTAGATCACGAGTGGGGTCAGTACACCCTTGAGAACGTGGACTACACGTGGAATATCATCCAACACACCCGCAAGGACAAGACGTTCACTGGCAAGATCATCTGCTGGGGAAACAAGGTGAAGCATTCGTATCGCTTCTACGACCACGGCCTCCATGTTGGGTCCCCTGCTTCGGCACACAAGCCGTGCTTACTCGACAATAATCAACACGAGGTCATGCTGAAAAGCCACTACGCCACCTTGCAAGGCTCCCCTCTCAAGGCACGCTGGGATATGGCTCAGTTTGGTTTCCTTGGAGCTCAGTATGTGCTGGTGCCGAACAAACGCATTGCAATATGGGTACGATGAATGACCCTGCTGACCGAGACTAGCAGAAGGATGCTTCTTGTCGTTGCATTTGTTCAAGTTTCTCGTTGAATGACAAATCTTATTATCATAACTCCAAACCTTTCAAGACCTAAATGCTCGCTCAGGTTGAAAGACTGTTTTAACGTTGATAGAAAAATGCATAGTGCATGGCGTACCCTAGAACGACGCGAACAAACCATAACCAACCCTTGTATATTTTTACCGATGTCGGCATACAAGTTCATTTTACTGCTCTTAAAGCATTTGAAAAAGTACAGACTGTAAGAATTTGATTATGCACGTGTCCCACTCGTGATGAGTTAGTTCTCGTGTGGGTTAATAAGCTTAAAATGCCGGACTAAATGCTCAGAGCTGATGTCAAGTATCAGTAAAAGGAAGCGTTATTGTAGAAAAATATTTAACCCTTTAAGCCAGTCAGACACGAAGCACAGACAGTATTAAAGAATAAATACCTTCTAAGAACATTTAATGCTCTCTTCTTTTTGTTACTGAAAcatttttgccgtttagagCTTCAAATGACACATAAATAAagtatcttcttcttcttc

Protein

Uniprot

Uniprot term	Description
P0DMV4	Intelectin OS=Oncorhynchus mykiss OX=8022 GN=itln PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146	INTELECTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0070492	Molecular Function	oligosaccharide binding	Interproscan