Gene detail

Detailed information of XP_020603215.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1460:224714...256761
NR annotation: XP_020603215.1, uncharacterized protein LOC110042211 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020747556.1

GTCGATGATGTTGAGGGATATGCATGTCTCATCACTATATAAAAACACTGTCACGCTATTGCTATCATATCTGGCTTAGCGCCAGCTTAGTTCGTCCAAGATTTCAGGGAATTTACCCACACGCAGTGTGCTatcttgcttgtttttgtttttgttccattaCGACCGCcatggaaaagaaagaaaagcaaagcgGAGGTCAACTTCTACCTGTTTTACTTGTTTGTATGTTGTTAGCCTGCGCGGGTCTTGTGTTTGCTGTTTACACTCACAAAGAACTCTGCTGGCTGAAAACCCAAATCCGTGAACATGAAAAACTCATTCAGACCTTACAACTCGGTAACAATGCTCGAGATATCCAGGGGTCAGAGGAAGTGCGTATAAGTAGGAGCGCTCAAACTTCATGCACTTGCGTTGGAGCCCCAGGGAGACCAGGTCAGAAGGGGAAGCCTGGAAAACCCGGTCATGTTGGCCCATCTGGCAATCCAGGACCTATTGGACCTATGGGACCTCCTGGACCGGAGGGGATCATGGGACGCCGCGGCGACAGTGGTCCGCCGGGAGTGATGGGACCGCCAGGACCACGTGGCCTTCCAGGATCTTTGAGCCGTGAGAGTATCCACCTGGTTGGCAATGGACAAAAAAttttccATCGGAGCTCCCGTGCTATAACCAGCTGGAACGTTAAGCTCATCAACGGAGCCATCATGTACAGCCCATCAACCGGGCACATTAGGGTGACGAGAAAGGGCTATTACTACATTTACAGCCAAATGTATTACTATGATGGCACCACCATACAGATGGGTCACAACACCTACATCAATCatgaaaaggtcatggaaagttcAGGGAGCGTTATTAGTGCCGAAAGGAAGTACAACACCAAGTATCATGGCGGGGTATTCTTACTTCAGGAAGGCGACGTTGTCTCTGTTAAAGTACCATTCGCTGGGCGATTTTTCATGGACAGAAGGAGCACCTTTTTTGGAGCGTTTCTGCTTAAAGATGCAGAAATACAAGatGAAACAACGACGACGTCACCAGCATCGGTGAGACAGAGCATCTACTTGAGTGGAGATGATACAAACCTTCGCAATCCTCTTAGTCATGTGATAACAAACTGGATCGTCCGTGACAAGATGGGCGCCATTAAATACGACCAAGGTTTTATCATAGTCGGTAGAACCGGACACTACTTCATATACAGCCAAATGTACTATAACGACGCCCGCACACATTTAATGGCACACCAAACTTACGTCAACAATGAAAGGGTTATGGAGAGTGTTGGAAGCGCTCTTAATGACAGCACAAAGGATAACACCAGATATCACGGTGGAGTTTTCCTTCTCCGCGTGAACGACACCATATCAGTTCGTATACCGTACCTCCGGCAGTACAACATGAAAAGTGATGCCAGCTTTTTCGGAACATTTTTATTGTACCCTGGTGAATCGCCCTGATTGGATCACGCTAAAGGATATCCCTGATAATGCAGCATTGACACAAGAAACAGAATCAATTTCACTTGAGAACTCAAACAGTTGCAAtcgattaatttttttaagtataAAAAATATCATATGTTTTGTATTGTAACCAGTTTAAAGCTAAACTCTATTCCTTTCTGATTGATATCCTAAAACAGCATCATGATTACATTGATATTCCCCAAATCACTGCAGCcttaaagaaacacaaatatGATTCGTTGTTCTCTACTCAAGTTGATGAAATGGTTGATGCCTACATGTTATTCTTTTCACGTTGTTATCCTCAGATTAAGTTATCTAGCGTAGAActaatttaaaagtaatgttaatattttttttatttcttcgtctCTCTAGTTGTTTgtcatgtattattttgttatttaagtaATCTGATAATAACTGATCGTGCCAAATTAGCCCAATGCTACTATCGGATCAGTTTTACATTTGTATTAATCATTAAatgtaattgaaataaagtgtgtatCTATTAAGTGTGTATATTTTCATTGGGTGGAATTAATCGGTTGAATCCAATAGTAAATGCTGTGATTTATGTTTTAGTaaccaattttaaaattactttaccCGACCTGATTCATTTCTGAATTGTAACATTCATTTCACACTCGACCTAAATTAGAATTAAAGAACTCACTGAAGCCGGTATCAACAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00229	TNF	TNF(Tumour Necrosis Factor) family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR006052	Domain	Tumour necrosis factor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11471	TUMOR NECROSIS FACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan