Gene detail

Detailed information of XP_020603245.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1460:1863157...1876881
NR annotation: XP_020603245.1, alanine aminotransferase 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020747586.1

ATTTATAATTCAATTCAGTACAGTAGTTTCTTAAACAGACCATGGCGTCTGCTCGGATATCGAGCTTGCTTAGGAAAAGTTCTTTGATCGCGCCAGTTCATATTCGTTCCTTCTCTCTAGTAAACGGACAATGTTCCAACGTCAAGATCCTCACTGGAGAGACGATGAATCCATTCGTAAAGCAGATCGAATATGCCGTCAGAGGAGCGATTGTAGAGCGCGCCTCAGCTTTGGAGAAAGAGCTAATGAAGGGTGCACAGAAGCCTTTCAAGGAAGTTATAAAAGCAAACATTGGAGATGCTCATGCCCTTGGAATGAAGCCACTTACTTTTCCCCGCCAGGTTATTGCTATGTGCGTGTGTCCAGAACTTCTGAACAGCCCTGATATACCGTctgatgcaaaagaaaaagccAGAAAAATACTGAGTCACACAAAGGGCTCCAGTATGGGTAAGTTGTATGTTATTGCTATGTGCGTGTGTCCAGAACTTCTGAACAGCCCTGATATACCGTctgatgcaaaagaaaaagccAGAAAAATACTGAGTCACACAAAGGGCTCCAGTATGGGAGCTTACTCAGATTCTCAAGGTCTGGAGGGTATTCGAAATAATGTGGCTAAATACATCAGTGATCGTGATGGCTATGCTTCCAATCCTAGCCATATTTATCTCACAAGTGGTGCTAGCGAGGCAATTAGGGCAATACTAAAATTACTCCAGACAAGTGTCAACACTGGTAATGGTAGAGCCGGCATCATGATCCCAATTCCGCAGTACCCCCTCTACTCAGCAACATTGTCTGAAATGAACTCCTACCAGATAAACTATTATCTTGATGAAGATAATGGATGGAGCTTAGACATGGATGAGCTGAAGAGATCTTTAAATGAGGCAAGACCTCATTGTGTTCCTCGTGCCTTGTGCGTCATAAATCCTGGCAATCCAACAGGTCAAGTTCTGTCATATGACAACATCCAGGACATCATAAAGTTTTGCAAGGCAGAGAAACTTGTTCTACTTGCAGATGAGGTATACCAGGCAAATGTATATGGAGAGGGAAAGGAGTTCCACTCATTCAAAAAGGTCTTACGAGATCTGGGCCCTGATTATGAGGACTTTGAACTCATTTCATTCCATTCTACATCAAAAGGATTTCTAGGAGATATTGATTTTCAGATTAAATTTGTGGTTTCAGTGAAGGTCATCATAGTACTGGTGGTGACAGCAGCAAAGTTGACACCACATGTAACCTTTGTGACCAAAATAATGTGTGATATACTTTCAACTGATTTGTTAAAACAGGCAATGATGGACTGCTTAGTGAGCCCACCTCAACCTGGAGATGAGTCTTATGACACTTTTATTAAAGAGAAAACAGCAGTTCTTCAGTCATTCAAAGACAGAGCTAAATTAGTTGCAGAGACATTCAACTCAATGGATGGCTTTCAGTGCAATGAAGTGATGGGAGCCATGTATGCGTTTCCTCGAGTGTTTATCCCTAGAAAAGCACAAGAAGAGGCCAAGTCCAAAGGTATGCACCCTGACAGTTTTTACACACTGGAGTTACTGGAGAAGACTGGACTTTGTGTTGTACCAGGAAATGGGTTTGGACAGAGGGATGGAACTTTCCACTTTAGGCTGACAATTTTACCTCCCATTGATGCCCTAAAACCTCTATTTGAACGTTTTAAAGTCTTCCATCAAGATTTTATGCGCAAGTACCGTGATCCCAGCTCCACtctttaaatttgaatgtttctGTGTTCTACCAATTGTAATCATTTGTGTGGAAGAGGTGAAACTGTATTTGCATCAAGGATTAGAATCCGTTTACTGGAATTTGATCAAGCAAGCTGTATTTTGCCAGCATGGGTATTTAGTAGAGTGCAAGCAGTTGAACAAGAAGTTAAAAAGGCAAGAGAGGGAGATGgtgttttgccatttttgccTCCCATGATCTGCTGAAGGGAGTGCACACTCACAACCTAGAGCCAGGATCACCTACAGATCAATGGATTTGATGGACATTGGTTAACAATAATATATCACATTTTCAATACACAGTCTGATTGTTACAGGGTAAACCACcctgggtggggggg

Protein

Uniprot

Uniprot term	Description
Q28DB5	Alanine aminotransferase 2 OS=Xenopus tropicalis OX=8364 GN=gpt2 PE=2 SV=1
Q6GM82	Alanine aminotransferase 2 OS=Xenopus laevis OX=8355 GN=gpt2 PE=2 SV=1
Q8BGT5	Alanine aminotransferase 2 OS=Mus musculus OX=10090 GN=Gpt2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR045088	Family	Aminotransferase ALAT1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11751	ALANINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004021	Molecular Function	L-alanine:2-oxoglutarate aminotransferase activity	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00814	GPT, ALT; alanine transaminase	EC:2.6.1.2	Amino acid related enzymes	ko01007	deepkoala