Genomic Location: Sc7jCM8_1483:144712...152462
NR annotation: XP_020603782.1, LOW QUALITY PROTEIN: harmonin-like [Orbicella faveolata]
| CDS | |||||
| LOC110042755 | |||||
| Transcript |
| rna-XM_020748123.1 |
| Protein |
| XP_020603782.1 |
| Uniprot term | Description |
|---|---|
| Q80VW5 | Whirlin OS=Mus musculus OX=10090 GN=Whrn PE=1 SV=3 |
| Q810W9 | Whirlin OS=Rattus norvegicus OX=10116 GN=Whrn PE=1 SV=1 |
| Q9P202 | Whirlin OS=Homo sapiens OX=9606 GN=WHRN PE=1 SV=4 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00595 | PDZ | PDZ domain | Domain | Interproscan |
| PF21219 | USH1C_N | Harmonin, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001478 | Domain | PDZ domain | Interproscan |
| IPR036034 | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR051844 | Family | Sensory Perception USH2 Complex Protein | Interproscan |
| IPR030237 | Domain | Harmonin, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23116 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005886 | Cellular Component | plasma membrane | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K21877 | USH1C; harmonin | - | Cilium and associated proteins | ko03037 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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