Gene detail

Detailed information of XP_020603845.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1483:174268...175471
NR annotation: XP_020603845.1, E3 ubiquitin-protein ligase TRIM56-like, partial [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
M9PH32	Protein meiotic P26 OS=Drosophila melanogaster OX=7227 GN=mei-P26 PE=1 SV=1
E7FAM5	E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12170	RNF125; E3 ubiquitin-protein ligase RNF125	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala