Gene detail

Detailed information of XP_020603883.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1483:244269...248442
NR annotation: XP_020603883.1, telomerase Cajal body protein 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020748224.1

gggagggacaGGAGGGGGGGTTCTTAAAAGAATAACCTGTCACCACCCACCTTCATCAGTACCTAACCCTTCCAGGGGCCCATATCATCCTGCCTTACCGGTACCCGAACCCCCAGATCtcttttaatcattattttgtaTTCACCTAGATTTGAACACCTGATCTCTGACTTCATAGTCCACCCTTGTCTCCACTACGCCATGTAGTGGATcgttgcaaattttcttttatttagttgtCTAATAAGGTGTTGGTCTCAGATTCGCTCTTCCACtttgatgaaaattaaactAGTTTGAAATCTAGATCATCCCAAATGAACACACCCCTCATATgccaagaaatttaaaaaatcaaaatttgtcaTCCAATTCTGGTAAACACAGAGCAGACTGTGCATCACCTTAGTCTACAGAAAAATCATGCCACATTTCAGGAGTTTAATTGGCATGTTGTTCATTACAGTCAAAAAGGAAGGTCAGAATGGAATCATTTCAAGTATTGCATTCAGTCAGGACAACTCTGGGATGTATGCTTTGGGCTCCTATTCAAAATCAGTTGGAGTCTACTCAGATTCAGATGGTGAGCTAATTTTTCTCCTCCAAGGACAGCAGGGTGGGGTCACTCATGTCATGTTCTCCCCAGATGGGACAAAGCTATATAGTGGCGGCAGAAAGGATGATGAAATTATATGCTGGGATGTGCGAAATCCTGGAACAGTCCTGTACTGTATGATGCGCTCAGTGGACACCAACCAGAGGGTGTATTTTGATATTGACAGGACTGGACAATACATAATCTCTGGCAATGCCGATGGTTGTGTTTCCATTTGGGATTCTACACTTCCTCCTCTCAATGACGACACAACAAAAGAAGCTACACTACAACCTGTCATGAAGTTTGTGGCTCATGGGGACTTTGTAAATGGTGCCAGTTTCCACCCCAGCCTTCCTCTACTGGCCACAACCTCTGGGCAACGCCAGTTTGAAGAACCTGGGAATGACAGTGATGATGAAAACACAATGGACCAGGACATAGTGGCACAAGTTGATAATTCACTTAGGATCTGGGCAGCTGGCACAAGTGTAAAATGAGAGCAACTCTGAGGCTGCTAAGAGTGAATTAGGAGACTAAAATGTACTTCAAGTTAAAAATCTGTAACAAAAGTAACAGCAAGAAGTACAAGGCTGCTTAGAGACTGGCTCTTTCCTGTGTGAAATTTACAGACAGCAGTGTTAAGCAAACTGTGACGACAGGTACACACAGAGGACCCAACAACTGGGAAAAGATTGTCCTTTTTGGAAATATATCCTCAGATATACTATTATGTATATAGCTTGTCCCACCGACATCTCCAAATAGTGCTTGCCATACAACCACAGTGTAAGAGACTCCAGAATGTAACCTCCAGCGTTTAGTTATTAACATTCAGGCAGCCATTTACTGTGTAGTGTCACTCAGTTGACTTTCCCAGCAAGGGTTTCCTAACTCattatttttcacaaagttTAGTACTGGGACTTGTAAAGTGAAGATTCTTGTAACAGACACCAATCGCTGGTTCCAGCAGACTGTGTTTGTTTGCATGTTGAAACCAATCAACTGCAAGTATGACAACAGTACACCCAAGTTGAAATTAGAGGACAGAGAAAACACGCTTGACTCAATCAATGTGAACAGCTCACTCTCTATAATATGTGTATCCTGGAATTCCCTGAGCCAGCCTGTCTtctaatgaaaatgttttgtggtGCTTGGTTTATGACTGCATTGTGGCCATTCAACTGTTAACTGATGGTGGTTGCTGTCTGACAGTTGACAACCACTTTTTGGGTAGAGGTGGAGAGGGGGCTGTTCTTCCCTTTCAGTGACCTTTCAGTCCAATAAAATGAGCAATAAAATATTAGAACTATTTATTAATAGCAAATTGTCTTATGCAAGAAGTACAGTATGTAGAAGGCCAGTGTGTGTTTTGAAACTATTTGaaacatataattataatttgtgAATCTAATGgatgtaaaataataaatttgtcCCAAGTTAACCATCACTATCACAGCTCTTGTTTCAACTCCATTGTCAACATACAAATTCTCCATACAGGTTTCCATTCACTTCTTATTGTGCTAGtctagttgaaaaaaaaaaaacgttttaaataaaatagtttCTCGTCATT

Protein

Uniprot

Gene family

Uniprot term	Description
Q8VC51	Telomerase Cajal body protein 1 OS=Mus musculus OX=10090 GN=Wrap53 PE=1 SV=1
Q60525	Telomerase Cajal body protein 1 OS=Mesocricetus auratus OX=10036 GN=Wrap53 PE=2 SV=1
Q5XII5	Telomerase Cajal body protein 1 OS=Rattus norvegicus OX=10116 GN=Wrap53 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051150	Family	SWT21/TCAB1 mRNA Splicing and Telomere Maintenance	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13211	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0015030	Cellular Component	Cajal body	Interproscan
GO:0030576	Biological Process	Cajal body organization	Interproscan