Gene detail

Detailed information of XP_020604285.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_15:1670887...1676815
NR annotation: XP_020604285.1, stimulated by retinoic acid gene 6 protein-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020748626.1

cattgtgttgtgtacttggacaagacacttcactctcacagtgcctctccacccaggtgtataaatgggtaccgacaaGCTTAATGTAGTGGACTGGCACCCATCGAGGGgaagcagaaatactcctagtcgcttcttgatacagaaatcgggataagctccggcctgatgggacacttggctcgtatgcaaacttGACCTTTGATAAGActtatatgggggattaactcctTGACCCTCCATCAAAATGACTTTTATTTTCCCTCTGAAATGCTGGatgtgtttgcttttatttctttattattcctAGACGGCTGTTCTCCATCATGTCgtactttttcttcttctacAACATTCTCCTTGGATTGTTTTCCTGCACCATGCGCATTCTCAAAGGAATGCTTCTTGGAGTTATCTTTATCTCTCGTATTGACCGCACGTCCTTGATGCAGGGATTCCAGACGTGGGACAAAGCTTTCGTTGCCTACCTCGGCTTTGTCACTGTGCTTGTGGCCCATAGACACCCAATTATGCTAGTGTTCTGCCAGTTACTTCTTGACAGAAATAAGGATTACCAGCCTCTGCAGGAACGACCTCCTACCCGACCTAAACCAGCTGTTTATTTGAGAGACCCTTCTGCAGGTTATCGCCGGGAGCCCCGTCTGCCGCGCATGTCTCAGAAGGCATTTAACCGCTGGTTCTTGGCTGTGACGCTGCTGCGTAACCCatccctcgtcaactatcggtGCCAGGGCCACGCGGTAAGACCCGCTTTGAGGCTTGGAAGTATCAACATTGGCGATCAGGTTTAGAGAATCCGAAGCTAGTTGCCAGATTGGTTGGGAACCCAACGTTTTATCCCCGGGCATTATTAGGGAACTTTAGAGTTGAGTACGAGTAAGAGTTTTCAATAGGCTGTGTTCGTATTCTCTAGCTTGCAGTGGAGGCTCATGTCGGGGAATAATTATCATGAAAAatagattaatgtcatttgctcTGAAAACACTCCCCGCGTTAGCCTTAAgagacctttttcgactgggtgGTTTGTTGCTCCATTTCAGAcgatgtgatgatactcttgcgaattcttgctttcaaattttcaaatagttgtGTGTATATGAAAGAACAAGTTTTAGATGgacaaaagaacaattctctagagaatgtcacgtggtctgtaatgggaaaacaaaccgcccaaacTAAAGAGGTCTATTGCAAGTTAATTCCAGTCCAATGCCGGCCGAGAGTACGAATATGGTCTAGTCTGGGTTTCAGGCCTTACATTATCACGTAACATATCCCATGAGGGgctaccctctctacctaaacCAACATCAAGgcctctggaaacgtcactggtttgaaattcgaaaatcgtgGTCATACTCAATCTCTTTCTCGTAGTCAAATCTGAAGATCCTTGTACCTGGGACTTGGGGATACGTTTGTGGTTCGCTTTCAGTGAGAAATATAGCCCGTCGTCATCATTATTGTACTAAGCAGATAACTCTATCATGAAGAGTAAGTGTGTTTGCTGTTTCAGCCTAAGCGAACTGTTAGATACATGAAGGGCTTACGTTGTCCCTGAACGAGTCTTTGAAGCTCGATGGAGATAATCCGCcatttttatttagaaatgCTCACCCAGATGCCCAGGAGCAGATCACGTGCTCAAATCCGTATCGGGTAGTTCGTCTATAGCATGACAGATATTAAGTAAAACGAATTTTTAAACAGTGTATGATTCTGTTAATTAATGCAGAACATAAGTGATCTTAATACCTTATAACAGATAATCTGAGAGATCATTACCGTCAGGTGCCATTTCGTTGGCAAGTGAATAATATCTTGCAGCTAAAATAAGGCTGTATACTGAGTGAtccgtgtttgtttgtttatttgtttgtttgtttgtttaaatattgttattgttagagtgtttgtttgtttgtttgtttgtacatGTCCATCTACCCTGCTGTTTTGTGataagttgaaataaaataatatattacaaaaaagCTAAAAGCTGAAGTTTACATGgtttaagaaaaaatataagtTTTTTAAGTGAATTAAGAGAATGAAGTTAAAGTTCAGATTAACTATCAGCCGTCTGGAACTGAGTAAACGATATTCTATCCAAGGTTAGTATAAAAGGTACGAGACAGAACTgcagaagagaaaaaaaataagagaaacTTGTGGTAGTTTTCAGAATAACTATGATCTAATTAAATTGTAACAAGTTTGCTCACAGCTGAAAATGATTTTACTCGATAGGAAGCAAAGATGTATAGCTATAAACATGATATGTTCATTTCAAGTTAACGCTATCGTTAGAAATATCTACAATATATTTCAGTGCTATATTTTCTTAGATGGCATCAGTAACTGGTGAAGACCTGCAAGTTATCTGTTTAGAAATTATCGAATTCAGCGTTCGACTGAGACGCTAGTTCTATGAAAGAAGTATTCTAAATTCTAAGTTACTTGGAGTAGTTTAAGTTATTGTAGGTTATTTTGCCTATAATTGAGTTGTAAGTTATTTCTCAAAGTATATGTTGTTGAAGTTTTTGTTCTAGCGTCAGCTGttaggaaaaaacaaagaaaagaaaaatagataacTTTACTCGTCAACGCTATTCCTACACGAAAGGAACTAAATGTAACTTAAAATATAAGTGTGGAATGGCTGTAACTTATTTACATTGCAGTTCTATTGTAAAATGCTACGATTAAATCttgcatttaaaaacaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14752	RBP_receptor	Retinol binding protein receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026612	Family	Receptor for retinol uptake STRA6-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21444	COILED-COIL DOMAIN-CONTAINING PROTEIN 180	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0071939	Biological Process	vitamin A import into cell	Interproscan
GO:0034632	Molecular Function	retinol transmembrane transporter activity	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan