Gene detail

Detailed information of XP_020604632.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1504:126222...138714
NR annotation: XP_020604632.1, striated muscle preferentially expressed protein kinase-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020748973.1

GATAGACTTTATAGGTAGTCATAGCTTATCTTTTGCCGAACCCGTCAGGATATAACCGAGCAGGTAGCTACAAAAGAGTGAACGCCGCCAACACAGTCCCAGAAACTGCCCTCTCACTCAGTTTCGTTTGTATACGTTTCTTTGAATGTTGTGCACGGTTCATAACCAAGCATCAACGCAACATACGATTCTCCTGGAATGATCTTCCAAAACTCTCTGTATCGCTTTGAGttgtttgaaaaagttatttagCACTCAATAGCGACTGGAGCTGACGAAACCATCAGTACATGGGTTACGTCCAGTTGCGGCTGTGGAAATGAGCTGCTGGCCAAAAGGCGCTCTACCaatttgtcttcttcttcttgcagCAAACGTGTTATGGAGTTCAGGTTGCCAAAAGCAAACTTTCACTCATAAACCCGCTAAGCCCACTCATGTCTACGTTGGTAGTAATGTTTCTTTAGAATGGCGCTACTGCCAGCCGAGTCATTTCAAACTTTACGAGGTGGCGTTTGGTTTATGGACTAGTTCTCCAGGTGTTCTGAGTAAAAAACTTGTGGCAGTCAGTAGGAGCGGTTCTGTTCAAGTAAGAGGAGGATACGAAGGCTTAGTTAGTTGGGCAGGAGATTTGACTTCTTCCCATGCAGTGTTTGTGCTTTATCATGTGCAGTCCGCAGACGAAAACAAAGTATTTGGAATCCACGTCGAGTACAGTGGTTTAAATTCACCATTAATAGACACAATACAGCTTCAAGTCGAGGCAGAACCCATTGCAGATCTTCCAAGAATCACCTATGTCACTACTCCACCCCTGGTCAGAACGGGACACAACGTGAGTCTTAATTGCATGGCCAGCAGTTTTTCTCCTGTTAACGTCACGTGGTACAAAGGGAATAAAGTCTTGACTGATGGTATGTCTGAGGCGGTGCTAACACTGAAGAACATCACAGATAAGGACTGGGGCAAGTTCCTGTGCGTTGCTAAAAATTCTGCAGGAGAAGATGAAAGGAGTGTTATCCTCAAAGTTCTCCCCGAGAGCCCAACAATATTGAACACAAATAAGAAAGTGTACAACGCCAGCTGGACCCTGCAATGGTCACCGGTTTACAGTGAAGGACACCTGGTGACGTTATACACCGTGTGGCATACAAAAGACACAACGATTCGTGAGAAATCATGGTTTCAAGAGAATGTTACCGGTCTTTTGTTCCGCATAGAGCTTACCGCTGATACGTCTTACTTGTTCGCTGTAACAGCTTGGAACAGATGGGGCGAGAGTTTactggaaaaaggaaaaatattgtcCATAACAACAGACTTTCCACCAAGGATTACACAAAAAACAGCCATAACGGTCACTTTTCTTCATACAGtatcAACAGAACCTGAGGCATTGGCATTGCCCTCCAGCAGCTACACTAAAAATTCTGTCAGCGGAAGTACTGAACTTACCCTCTATACAACTCTGTCTGTTATTTTGTGCATACTTATGCTTGTGGCTGTCGCCATTTTCCTCAAACGAAGGAaacgaaacaacaaaaagaacacaAGTAAGTAACTTACTATACGGATAAGTTGTCATCTTTCATTCAAAGCAATGCAGTACATGACAACTGACTTCAAGTAATAATATGAcaagtaaagtaaaacaaattagGAGAGGGCATCGACCTttcaaagtgactccatcgcgagacaaacgaaaaaaaaaattcctcgcCTATCGTTtaccaagaaaaagaataaataaattaatcatctGTAGTTAACAAGGGCTAGGAAAACTGGGAAAACATGGtgcttttcaaatatcacttgtcaCCCGattaacatttaatttatttaccagTATAGTACATAAGCATGGTAACGCAGCCTATTGTTCCATTGGCTGAGCGATCGACTCGCAAAGCGAACGAGGACCAGAGAAAATTGggataaataaattattaatacatgaagaaggaaaaaaggaagaaaagaagagaaaaaaaaaacaacgaagaaataaaatatgaaagaaatgaaGACGAAAGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR051275	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640	NEPHRIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0050839	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan