Gene detail

Detailed information of XP_020605232.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1546:563160...566830
NR annotation: XP_020605232.1, photoreceptor-specific nuclear receptor-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020749573.1

AAATACGTgatgtgaaataaaattaagcttCGCCACGGATTTCTCTGTAGTGTAACATACTATTATCTGATGAATGAGACTGATCCTTAGACCAAAAGAGGTCTGACACATGAACCGCAATCACCTTTAAATGTCTagcgaaaaaatgtttttattactCATTGTTACAGATTGTTTTGCCGAGCAACATTTAAGAATGTTAATTTACGTTTTGGTTAGTCTCTGTTCTAGATACAGCCGACAATTTTATCCAAACTTATTAAAACTCTTCATGaccgttttttaaaaaaacctgtCTGGCAAATTTTGAAAGTCTCTTCGAcagagttattattttttttaatagtaatTATGATCAAAATTGCACAGCATTTATTTTACGCGATCTtttcgttttcgaaaatttgaaaactgtaaattaaaaaaaaaaaatagaacgtTTCAATGGAGTTTAATTGTATTCTCAGTGTGTAAAGTTAAGTTTGACcaaaaattgataataaaaaataaactaggaaaaaagccaacaaaatttGTGCCCTCACTGTCGGAAGTCGCGTCCATTTTACTCAACATGTACCGCGAAAACTAAACAAACCCTAAAGGTCTATAGAAACCGTTCAAGTATTTTTAGAATTTCAAATTGCttcataaatttgaaataaattgaagaaTGGCAGTAAAAAAATTTGAATGGCTAATTCAGATTCAGTTGGATTCGTTTCAGTACTCAGCCAAATTCTCACACGCTTTCTCTCTTTTCAGCCGTTCAACACGAGCGTGCACCACGCTCCTCGCAAGTTGTGCCAATGGTTCCCGCGCGTTCAGTGCTTAGCAGCGCTTATGAGCAGCCTTCATCACGCCCTATTCCAGAACCACAATTCAGTTATCTCAAAAGCGATCCCGGGGATAGACCACAGAGTCAAAGCAGCCCAGAAGCCGACATTGATCACAGCAGGTCCAACGAGCTTCCACGCTTTTCTCCTCCAGCTCCCCAGTCACCCTACCACGGCCAGAATAACAACCAGTCACCAGACTCCTCAAAAAAGCGCGGATTTCTGTCGATAGCAAGTATGATTGAAACAAGAGACAACACAGCCCAGCCTTCCCCAAGTAAAGCTCACTCCAGTCCCAGTCAAGCAACAGAGGACTCAAGTGACAGAACGCCAATGGTATATCAACCCTCACCGGAGTCTGTATATGAATCAGCCGTGCAATTACTGTACATGTCGGTCACCTGGGCGAGGAACATACCAACATTTCTGGACCTTCCATTCCGTGATCAGGCTATCTTGTTGGAGGAGGGCTGGAGTGAGCTGTTTGTTCTGAGCGCAGCCCAGTTCTCTCTGCCAGTGGACATGGGTCCTCTTCTCTCCGCAGCTGGTCTGCAAGTGGACAAAGCTCCTACTGATAAAATAGTCGCAGGAATGGCGGATATTCGTCTCTTGCAGAATGTTGTGGCAAGATTCAAGCGAGTACAGATTGACTCTACTGAATATGCCTGTTTAAAAGCCATCGTACTCTTTAAACCAGACCTACGTGGCCTCAGAGCGCCTCACATGGTAGAGAGGCTTCAGGATCAAGCGCAAGCCATGCTGGGAGAATACTGCCGCAGCCACAGTCCTGATCAACAAGTTCGATTCGGTAAACTGCTGCTAATGCTTCCGTCTTTGCGATCAGTCAGTCCGAAGATGATCGAAGATTTGTTTTTCCGCGGAGCTCTTGACAACGTCCCTATTGAGCGAATGCTGTGCGATATGTTTAAGTCAAGTTAAGTCGACGACTGGTGACTGGTACATGAAGGCCTGCGTGAACTGTCATTTCACCAGGCTCATTGTATATACTTATAACTATTAAAATAATGCTTAGAACATTTTTGATATAGATTTTCGGACGAAGTTAATCCGAGCACTAAATTGACCATCCTCGACGTTTTGCACTATTGCAGTCGTTAATTCACGGCTCAAATTAAATGATAATTAATGGAACCTATCAAAATATTATGATACCACAGAACTAGAGTCATAGATAAGGTTAGCTGCAGTCTTTACATTAGGGCATAGAAAATATAGGTTATAACTTATAACGtgtaaaaaatatcattgtagTTTCTAGTATTTCGAGTCtgttatatttcttttgtaaGAACAAAggtcagttttttgtttttttggtatttGGCTAGAATTAACCTTGATCTTGTTGTtttgtacagatttttatttgtCGGAAACGGTGATTTCTCGCGGGAAAAGAACTGTGTCAGACACAACGGTGTAGTACTTAAAAAGACTGGGATCTAATATTTTACCAAGGACTCTCGCTTCCGCTGGTCACCGCTGACCAGTAAGTGAAGGTCGCTAAAACTTCCGTTCAGTTGAGCTGTAAACGGTCTTTGGTCAGCAAATAATTATATAGAATAACGTTTTATTTCTAGATGACATTTTCATAGTTTTTGCATGGCAACAAACTGAGTAAAATATGTAGAAGTAATTTTATAGTTTTGGACTTCTAGCATGTGTAATAATGTACATATTTATACTgtatttaaaatgaacaattggGGGAAGCATCTATCAAATAAGATGCAATTTTTCAGCAATTTAACTaacatttcgaaacttttcaGTTGTCTGTCAACTTTGTTGTTTCTgatatatgtttttcttttctgcttttcGTATTTGAGTAACCAAACAGACCAGCAAAGAATGAGTTAATAGGTTCCATGCaactaattattttaaagtgGAGTAATATCAAATGAGgttgaaaatgtaaatatattgtGTTTTAGAAAGGGAAACCTGGGGCAGTCGTGAAAAATAATTacgtttgcttttttaaaatcatttttatccCTTAGTATCCTTTCGTAAATATTCTACAGAATTTTGAGTATCCTAAATTTTTGATAGtttaatttatacaaaagcTTTCGATATTTGTTTAAACTAAAATATATCTCCTTTCATATTTGTCTACTTGTACCAAAGGAGTTTTAATCCTAaacctgtaaaaacaaaattttctagGATACTTGGAGGACAAAAATGCTTGTAGAAATTTAtactatttaaattaaaatcttcTACTCAACTTG

Protein

Uniprot

Gene family

Uniprot term	Description
Q9TTF0	Photoreceptor-specific nuclear receptor OS=Bos taurus OX=9913 GN=NR2E3 PE=1 SV=2
Q9Y5X4	Photoreceptor-specific nuclear receptor OS=Homo sapiens OX=9606 GN=NR2E3 PE=1 SV=1
Q9QXZ7	Photoreceptor-specific nuclear receptor OS=Mus musculus OX=10090 GN=Nr2e3 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	SF-like
Transcription Factors Family	THR-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR033544	Family	Nuclear receptor subfamily 0 group B member 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24081	NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0043433	Biological Process	negative regulation of DNA-binding transcription factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08546	NR2E3, PNR; nuclear receptor subfamily 2 group E member 3	-	Nuclear receptors	ko03310	deepkoala