Gene detail

Detailed information of XP_020605602.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1622:475574...491287
NR annotation: XP_020605602.1, uncharacterized protein LOC110044400 isoform X2 [Orbicella faveolata]
Species abbreviation OFAVE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_020749943.1

attaaatttagctgTACTGGTCGCGTCTTCTACCACCAGTTTAAACAGAACAAGCCCATGGGTGGGAAAACTGTTAACTTCCTTGGGATCACAACGAGAGAATTCGAACTCTCCATTGCTCACAATCCATACGTATCACACTGTGTGACAACTAGCATAGGCTTCTTCTTCTGTCCTTGTAGCATTCAGACAAGTGCCTGGTTTCATaggatttgtttttattttctcgcGTCCATGGTTTTGGCAGTGAACTAAAGATTGGTCCTTATATTTCATAATAATTAAGATTTCTAATCCTGGTTTCAGACTTGTCAATCATAATAGTCTTAGAGAGAATATTGCAGAATGAGATGCAAAAACAGTAATTTGTGAATTATCTAAATGTAAATAAGCATAGACTGCAATATTGTTTCTTAACTGTGGCAATCTGTTTGGCTAGTTTGTAATCAGGTCTAGCAAATAGTAACTTTAAGACCTCgggacaaaaatattttcagctagTGTAGGACTTTCTTATTCTGGCAAATGAATAAGAAATCAAGGCTCTGAGGTAACATTGTttagttctagaaaatatccatacctcccccacggaagggattttttgcAAGACCCCCTACCCCTCtgaaaattccaattaaacttgatacatttctttaaattttttggtcgtagagaaccccccacccccccaggaaattctaatcACTTCTGTGGGCAGAGTATGGATAATTTCTGATACTGCACATTGGgaaataaaaattccaaatggCAAGGGCTAGCTGTGCAATTATCTGGCATTGGCTTTGTTCTGCCTGACAAATTGGGAGCAGCCAGAGGGATGGGGGAGGGAGGTAGTGTTCCAGTATATACCTGAAAACAAATTACCTGTCATACGCAGCATGCAGGACATGCAATGCAATGCAGGAGAGAGCATGCCCTAGACTGAGATGTGATCCATAATCCATATACTACGGTATTATTAATATAGCATACATGCAAACCCTGTGGTTAACCCTGATAAATTTGACAGTTTAGGATTGGTTTAACCCTTTACTCCCTAAGTGTGCCATTTGGCACACAAtgtcataactttgtgaatatttgagagatttctatgcatttttgccacaaaaattgtcttgtaaagatctgctcattgaaggcataaaattgtgaccccctTTTATCTAACACGTGGTAGACCACCCtcataattttccaatttctcttTTGAGATGCACAtagaatgcaagacttgtttcacatcaagCTATATACTAAGACCTGCTAAGGAAGCTATAGTGTAGGGGCATACCCatgatatttgagaattgaTACGTGTTGGAAGCTTTTCAGCTtcacatttaaaacaatttttctcaaaatgactacctccttcatagctgctgatgtcagttcttaaataagctgatcagTCAACAATTTTGCCTCTTCCATTCATTTTTCTCCCTGTCTgaaatgatttttaatttttgacttACTTTAAGGTGACCCCGAAGTGGGAAAATCCAGCATATTTTTACGCTACACCAAGAATCAGTTTGACTACAGTTATCAGCCCAGTGCTTCTGTGAGTATTGGGAATGTTGTGAAGCATGTCAACATCCCTTACGAGACTATTGTGTCTGTGGCATTATGGGATCTTCCAGGTCGAGAGGAAATGGACTTGAGAAGAAGTTATTACAAAGATGTGGATGCTGCTATTGTTGTTGTTGATGTGGATGATATTGACTCTGTAACTATGGCAGGAACTTGGAAGCAAGACATTGTCAACAATGCGGTGTTCACTGCTAATTCTGGAAATTTACAGGAGGATACTAAAGATTCTAAACAGATACCCATTTTGCTTTTGGGTAACAAATTGGATAAGcttaaatatcaaaatagtGGAGAGGAGAACAATGAGGATGAAGAACTGATCAATTTAGAGTCAGTGCGAGCACTGGAGGGCGTGGCTTTGCAACATGGCTTTGTTGGAAGtgttaCAGTGTCAGCCAAAGAGAGTGATAACAGTGTCCATGCTGCAATTCAATCTCTGGTACGACACCTATTACAacagaagatgaagaaaaagagGTTTGCTGCAAAAGGAGGGAGGTTTACTAAGAATGAGGAAGAGATGGAGGAGAAAAACTATGTCACCATAAGTCCTTTggaaattacagaaaaaaaggaGTTCATACCACTTATTGTTACTAAAGTCCCTGAGTTTGATGTGTTCTTTGCTGAATGCAATACACCCATCGAAACAGTGCAGAACACAAGTACAGAGCTTAAGGATGCCATGAGCAATTTTAAGAGATCTTGCAGTGTAGCAGGTGTGACGAGCAGTGCTAAGGCCAGTCTTGAAGAATGTATTGATGGCCTAAAGCAGCTTATAAGGAcagatgacgatgaagatgcgTTAGAGGCGCATGAGGATGGTGGGTACATAAAGCTGATTGTCAAGGAGGAGTGTAAAGATCGTGTGCCTGGCCCTGTGCAGAGAGTACTGAAGTCATTCCACACAGAGGTTGGTGCTGCATCCAAGAAGGTTCTTATCCAGTCTCCCGGTGCTCTAAACAAACTTcgagaaaatgaagacaaaataaaCGAACTTAAACCGACAGCATTTGAACGTGCGGTTTCCCGTGGAATGACTCAAAGAAGAGCCAGAGCTGCGGTGATTAACATCGATTCGAACTGTACCAGGATAGGAGAAGCTTTGGCTGCAGCAATGGAAACCATGACGGCTGTGGATAACGATTATAAAAGAATTAAGGCAGCTATGCTGTGGTAGCTTCTCAGTTGCAACGTTATTTAAAATTGGAGACTTTCTGATAACAGGTTCAGAGGTATAGCCAGGCTTTGGTACACTCGCAAAAGGCCTGACAGTCAGTTCTGGAGGAAGGCTAACCTGCTGAGATCTGTAGGCCTGTTTCCCTCTGAAATTGTAAGATTTAGATTCTTGTAAATGCCATTAGGTCATGGCTGGGGTAGTGCAACAGTTCCTTGCGTCCAAAAATAGTTTGGATtcttttaaatgcaatttacatgtaactttaacTATCTAGACTTTAGATTGGTATGGAGTAAAATTTGTTCACCCGGTTTTACAGTGTTGCAGGCTCTCTACGTCTTTTCAGCGAGGTGACAGGCATTCACATAAGGGTATGCTCTTTGGCAAATTACACAGGAAGAGAGTGCATTATTTTGTAACCTAGCTGAAAATGGGTTGTTCTGAAGTGGATCATAACTTTTATTCAATCCATCTCTACTCAACCAAGAATCAAACACGCTGAGATATTACGTACAGAGCCCAAAAAAGATTACGTTGTCTCTAAATCTCTCTACGTTACAGGAAAATATGTTCAGTTGTTGTTCTACACACTGTTTTAGAGACGGAAATTACGGGACAGACcagtggaaaatgttttaatgatCAAGCTCTAAAGGCATTATTTTTCAATGAGACGCAAGTTGATAATGCAATACAGTAACTTTGACTGATGTGCAGTCTTTAAACTCTAACATTCCATCAACATTCGAGgacattttatatttcatataTGTAAATAGGTGAAGCTGTAAACATCGTCTCTTTCAGGACGTTCTTTGCAGAGATCATTGTCTACATCATGGACTTAGAAATTCGCCTGAACAAAATTGATATCGTTATTtgaaaaaacattcaaaaattagttttgttgcCACAATTGAAAGGGAATGGGCGAAAGCTAACCAAAGCAATTTTAGGCGATGCATTGAAAAGTGCTAACATTTACAGACGTTTGTATCACTGTAGGAGTTCTTTCCTCGCATTCCCACACAGCAATACAAAGAATAGTGTTTTCAGAAGGAACTATCTCCCTGAATACTTAACTCATTAATCCACTCACTCATCTGAGAATGAAGCCAggatttcattcatttttctccacagattgattttatttctgttaTGCTACACAATTAATATAAAACGTCTTCAGTGACGATCAAATAACGTTATAAAAACAATGAAGTACCATATCGCAGCTTCGTTCTCTCTAGATAAGTTTTGCTTCTAAATAGTTTTAATAGTGTAGTTTTCGTGTAGTGTAAATGACTAAAATTTTATGTTAGGTAACTTTTGTATGTAGCTGACTTTCTGTACACGTTGGACATATTTTACgtcttaaaattttatttaaattattaacgatttttatttttctacgcCAATAGCGCTATGCACCGCTGTAaataaaaactacttttttaaCGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050227 all species →	Family	Ras-related protein Rab	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977 all species →	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_020605602.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.