Gene detail

Detailed information of XP_020605933.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_166:500215...517954
NR annotation: XP_020605933.1, polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020750274.1

acaaatcgaaggggaaaaaactcggtccgtaacttacagtacggacctcgaactcgtttagtaagaggtatatatgAACTGAATTTTCTCCTCCACTGCTGTTTCTGTTTGGAGATACAAAGGAAGATGGGAGGAGAGAGAAAGAGATAATGCAAACATGTTTTGCTAATTTCCAGATCAGAAGGAAAACTACTCAACATCACCGAAGGGCTGTTTTGTACCAGTCTTCCCGTCGTTTCCCGACCTAAGTAAAAAATGATGAGACTGGGAACAAGTTATataaccaacatggcggctctgGCAAGCTCTCGCGCAAATTTGAACAAGGGGTATTTTTTTGCATTGCGGAGTGCACTAAAAAGATGTAGAAGATGTAAAAATACAGAATGTgcagttgaatttgaaattgGTGACCGAACTATGAAATTTTCAACGGGAAAAATGGCAAAGTTGGCGAATGGATCCGTCGTTGCTGAGCATGGAGAGAATTCGACCTTGGTTACTGCTGTAAGTGAGATGACATCCACAGATACCAATGGAAGAGGTTTGCCTCTATTGGTAAGATCACAACATATTTCCTGGGCAGATGCTCTTGAAGTTGGGGCCAGATACACCACAAAAGTTGTTGACGTCAGGGACTATGGTGTGATGGTGGAAATCCTACCAGACGCGCCCAGTGTGCTTTTACACTCCTCTGAGATGTCTCGCGGCAAGGTCAAGAGCAGTTTATGGGCAGCTGATGGACTCCACGATCCTGATATTGCTGCTATAAATGGAGcgTCTGCAGCTCTTGCAGTTTCTGATATTCCTTGGAGTGGTCCTGTTGGTGCGGTGAGAGTTGGTGAGATTGATGGAGAGTTTGCCGTGAATCCCACCTGGTCAGAACTTGACAGCAGCAAGCTGAACCTTGTTATTGCATGCAGTGAAAGGAAAGTTGAAGGTGTAGCTGGATGCGATGGACGTCCCTTGGATGCCCTCCGACCCATTAAATGTGAGGTTGATTTGTTCAAAAGCCTTCATGGGTCATCGTTATTTCAAAGAGGAGAAACACAGGTGTTCTGTACAGCAACACTTGGTTCTCTGCGTTCAGCAAGACAACGTGATGTAGCAGAGATGGCTGTGGGGGATGTGAGAGAAAAACCATTTATGCTCCACTATGAGtTTCCACCGTTTTGTGTGAATGAAATTGGATTTTCTAGTGGATACAGTAGACGAGAGATTGGTCATGGAAATTTAGCTGAAATGGCGTTAGAACCAGTTGTTCCTAAGGATTTCCCATTTGCCATTCGGCTTACATCCCAGGTGTTAGAATCAAATGGCTCTTCATCGTTAGCATCTGTTTGTGCAGGCAGTTTGACACTGATGGATGCAGGGGTCCCAATCACTCGTCTTGTTGGAGGGGTGGCCTGTGGTCTGATAACAAGCAGTGACGCCGAGGATCCAGATAAACAAGACATCGAGCAGTACCGTCTGTTGACAGATATCTTGGGCATCGAGGACTATATGGGTGATATGGACTTCAAACTTGCTGGAAGCCGACAAGGGATAACAGCTCTTCAGGCTGATTTCAAGGTCCCAGGCCTCCCGCTACACATCGTGGAAGAAGCAGTAACAAAAGCAACAGATGATCGGATGAAAGTTCTGGATATTATTGAAGAATGTCAGAGCGAGGCTAGGAAAACTCCCAAGGAAAATGCACCAGCTGTCGTGAACGTAGCTGTTCCTCGATACCACGTCAAAAAGTTGCTTAGTGGTGGAGCAAAGGTTCTCAAGAACTTGGAGGAAGAAACAGGTACAGACATCACTCGGATTGATGAAGacctgttttctgtttttgctcGAAACGCTAAAGCTCTCAAAGAAGCGGTGGACAGGATCAATGAAATAACAACTATAAAGTCCTGGGCAGATGCTCTTGAAGTTGGGGCTACATACACCACAAAAGTTGTTGACGTCAGGTGAGTGATTAAGTTTGATATTGTAGACTATT

Protein

Uniprot

Uniprot term	Description
Q8TCS8	Polyribonucleotide nucleotidyltransferase 1, mitochondrial OS=Homo sapiens OX=9606 GN=PNPT1 PE=1 SV=2
Q5RCW2	Polyribonucleotide nucleotidyltransferase 1, mitochondrial OS=Pongo abelii OX=9601 GN=PNPT1 PE=2 SV=2
Q8K1R3	Polyribonucleotide nucleotidyltransferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Pnpt1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01138	RNase_PH	3' exoribonuclease family, domain 1	Domain	Interproscan
PF03725	RNase_PH_C	3' exoribonuclease family, domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027408	Homologous_superfamily	PNPase/RNase PH domain superfamily	Interproscan
IPR001247	Domain	Exoribonuclease, phosphorolytic domain 1	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR015847	Domain	Exoribonuclease, phosphorolytic domain 2	Interproscan
IPR036345	Homologous_superfamily	Exoribonuclease, PH domain 2 superfamily	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR012162	Family	Polyribonucleotide nucleotidyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11252	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000958	Biological Process	mitochondrial mRNA catabolic process	Interproscan
GO:0000965	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0004654	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan