Gene detail

Detailed information of XP_020606353.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1006:803753...805771
NR annotation: XP_020606353.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020750694.1

aacagctctgtaatcataaggtttgagattttcttacggctttccgggtgcgaaaactttccGAAACCTTCGAGAAATGGACCCCAGCGggccttcccgtcctcgtaATAAGGAAATGAATACAAATCGTGACTGGCCTGCAATTATCATATCACCCAGCTGTAAATTGACGTCACTAAGGACACCCAAACAATTCcctttataaattaaaaaccatCGGTTCTCGAGCGCAGTTTCGTTCTCGAGCGCTgtctcgtttcgtttcgtttacTTTAGCTCGAGGAGAGCTGCTTTGAGACTGTCTCCAACGTTTTATGAGTTCCAGTGTGACGAATTCGAAATGATCTGCGTACAGATTGTGAGATTGAGAGCCAACCTGAAGAATTTCTAGGAGTGATACacaaacttttgttttattacataAGTTTGACAGTATTTAACTCAATTTGAGATAAATACATACCTCCTGAAGGCCCGTATTCAAAGCATTGGAAGGCATTCGGGACTCTCTTTGTCCGCTATCTTGAATTTCTTGGTTTGTTCTGAAATACAACACTCCAACCAAAACACGCATTCTCATTGGGTGAAACGCGAGTTtcgtgacatcacagatgtcCTAATTTAATCGGGATTTCCGGACTGATACATGTGTTTCACTTGCGTTTTCGACGGAATCAACTGTAAGAGACAAGAAGTATAATTATCTATAAATCGTTTTAAAAGGAGCTTAAAGGGGTTGACGGGACAGCAAACGCACCTGTCGGCGATCGATAAACTATACACCTCGTCAGGTGAGATTACCTTGTTCAGTACGCGTCAGGTTGTGCGAGCAGTGCGACGTATAACACCAGCAGTAGGAGAATTGGTGAAGTGTTATAACATCTCCATTTTGGCAAAATAATGGCCGCTTATCTGCATACAACGGAAGAAATGAATCAAGAATATCAAGCAGGTTTAGAATTGGAATCTGAAGTGTTGACACATGCAGACAGCAACACGCCCGAGAAAGATCATATTGAACTGCTTGTACAGAAGGTCGAAGATGATATAGCCTACAAGCCTTCGATCACTTCCGTGATAGAAGATGGAAAATTTCAACTGAAGCTAACGCCCTCATCGTCAATACCCTACGAAATAAAAATCAACGTGAACGGGGAGAAAACTGCCAACAGTAATTCAGTTGTTCGAGTGAAAGAGCGGCAGTTTGAAGTTGTTGGCGAACTGGATGTTCAAGGAGAAAAGCTTAAAGGATCCAGTGGAATAGCTGTGAACAGCAAAGGCGAAATAGCAGTCACAGACTTCGATGGCCATTTTGTCGCAATATTTGACAAGGATGGAAAACGTTCTAAAACGGTTGGTCATTATGGAGACAACACTGGAGAATTAAGATTTCCTGTTGACGTCACTTACGTCAACGATGACGTCATCCTAGTGGCGGACGAGTGGAATCACAGGGTACAGCAGTTTCATATCCGAACTGGTGAGGTTATCAAAAGCTTTGGAAGATTCGGTGCGAGAGATGGAGAGTTCGCCAGTCCTGTTAGTGTCTGTTTGGATGATAACGGACATGTTTTCGTAGCAGAGTTAAACAACAATAGAATACAAGTTTTGACACAAGACGGTCAAGCACTGTACAAAGTGGGCGACACCTTTGATCACCCGCTGAGCTGTATCACCCACAAAAACTTGCTTATCGTGTCTGACAGTCGAAATAATTGCATCAAAGTGTTTGATGTTTCAGGAAAGTTCTTGTACAAGTTTGGAGAAGGTGGGGAGAGAGATGGGCAGTTTAAAGGCCCTTTTGGTTTGTGCGCTGACAGAGAGGGGAAGCTTCTTGTATGTGACCAGTTTAATGGGCGCGTTCAACAGTTCACTCTGGAAGGTCGCTTTACCGGTAAGTGCGCTATTGGTGCGCTGCGAACACCTTGGGGTATGACAACTACGGAAGATGGCCGTATTCTGGTGACCGACTACATGGCGAGGAAAATACACATTTTAAAATGAGTGCTTTTAAGCTCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan